* using log directory 'd:/Rcompile/CRANpkg/local/2.15/BMS.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'BMS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BMS' version '0.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'BMS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.addup.enum: no visible binding for global variable 'pmpold'
.addup.enum: no visible binding for global variable 'lprobold'
.addup.enum: no visible binding for global variable 'null.lik'
.addup.enum: no visible binding for '<<-' assignment to 'inccount'
.addup.enum: no visible binding for global variable 'inccount'
.addup.enum: no visible binding for global variable 'molddraw'
.addup.enum: no visible binding for '<<-' assignment to 'msize'
.addup.enum: no visible binding for global variable 'msize'
.addup.enum: no visible binding for global variable 'kold'
.addup.enum: no visible binding for '<<-' assignment to 'cumsumweights'
.addup.enum: no visible binding for global variable 'cumsumweights'
.addup.enum: no visible binding for global variable 'position'
.addup.enum: no visible binding for global variable 'K'
.addup.enum: no visible binding for global variable 'b1'
.addup.enum: no visible binding for global variable 'b2'
.addup.enum: no visible binding for '<<-' assignment to 'bmo'
.addup.enum: no visible binding for global variable 'bmo'
.addup.enum: no visible binding for '<<-' assignment to 'null.count'
.addup.enum: no visible binding for global variable 'null.count'
.addup.enum.wotherstats: no visible binding for global variable
  'pmpold'
.addup.enum.wotherstats: no visible binding for global variable
  'lprobold'
.addup.enum.wotherstats: no visible binding for global variable
  'null.lik'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'inccount'
.addup.enum.wotherstats: no visible binding for global variable
  'inccount'
.addup.enum.wotherstats: no visible binding for global variable
  'molddraw'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'msize'
.addup.enum.wotherstats: no visible binding for global variable 'msize'
.addup.enum.wotherstats: no visible binding for global variable 'kold'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'cumsumweights'
.addup.enum.wotherstats: no visible binding for global variable
  'cumsumweights'
.addup.enum.wotherstats: no visible binding for global variable
  'position'
.addup.enum.wotherstats: no visible binding for global variable 'K'
.addup.enum.wotherstats: no visible binding for global variable 'b1'
.addup.enum.wotherstats: no visible binding for global variable 'b2'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'bmo'
.addup.enum.wotherstats: no visible binding for global variable 'bmo'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'null.count'
.addup.enum.wotherstats: no visible binding for global variable
  'null.count'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'otherstats'
.addup.enum.wotherstats: no visible binding for global variable
  'lik.list'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
  'add.otherstats'
.addup.enum.wotherstats: no visible binding for global variable
  'add.otherstats'
.addup.enum.wotherstats: no visible binding for global variable
  'otherstats'
.addup.mcmc: no visible binding for '<<-' assignment to 'inccount'
.addup.mcmc: no visible binding for global variable 'inccount'
.addup.mcmc: no visible binding for global variable 'molddraw'
.addup.mcmc: no visible binding for '<<-' assignment to 'msize'
.addup.mcmc: no visible binding for global variable 'msize'
.addup.mcmc: no visible binding for global variable 'kold'
.addup.mcmc: no visible binding for global variable 'position'
.addup.mcmc: no visible binding for global variable 'K'
.addup.mcmc: no visible binding for global variable 'b1'
.addup.mcmc: no visible binding for global variable 'b2'
.addup.mcmc: no visible binding for '<<-' assignment to 'bmo'
.addup.mcmc: no visible binding for global variable 'bmo'
.addup.mcmc: no visible binding for '<<-' assignment to 'null.count'
.addup.mcmc: no visible binding for global variable 'null.count'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
  'inccount'
.addup.mcmc.wotherstats: no visible binding for global variable
  'inccount'
.addup.mcmc.wotherstats: no visible binding for global variable
  'molddraw'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
  'msize'
.addup.mcmc.wotherstats: no visible binding for global variable 'msize'
.addup.mcmc.wotherstats: no visible binding for global variable 'kold'
.addup.mcmc.wotherstats: no visible binding for global variable
  'position'
.addup.mcmc.wotherstats: no visible binding for global variable 'K'
.addup.mcmc.wotherstats: no visible binding for global variable 'b1'
.addup.mcmc.wotherstats: no visible binding for global variable 'b2'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
  'bmo'
.addup.mcmc.wotherstats: no visible binding for global variable 'bmo'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
  'null.count'
.addup.mcmc.wotherstats: no visible binding for global variable
  'null.count'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
  'otherstats'
.addup.mcmc.wotherstats: no visible binding for global variable
  'lik.list'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
  'add.otherstats'
.addup.mcmc.wotherstats: no visible binding for global variable
  'add.otherstats'
.addup.mcmc.wotherstats: no visible binding for global variable
  'otherstats'
image.bma: warning in
  strwidth(names(pipbounds)[which.max(nchar(names(pipbounds)))], unit =
  "inches"): partial argument match of 'unit' to 'units'
plotComp: warning in
  strwidth(rownames(compMatrix)[which.max(nchar(rownames(compMatrix)))],
  unit = "inches", cex = cex.xaxis): partial argument match of 'unit'
  to 'units'
plotComp: warning in axis(1, las = 2, at = 1:nrow(compMatrix), label =
  rownames(compMatrix), cex.axis = cex.xaxis): partial argument match
  of 'label' to 'labels'
plotModelsize: warning in axis(1, las = 1, at = 1:length(ksubset),
  label = ksubset, cex.axis = eval(dotargs$cex.axis)): partial argument
  match of 'label' to 'labels'
pred.density : calc_alldens: no visible binding for '<<-' assignment to
  'xf_index'
pred.density : calc_alldens : <anonymous>: no visible binding for
  global variable 'xf_index'
Found .Internal calls in the following functions:
  '.fls.samp' '.fls.samp.int' '.ols.terms2' '.rev.jump' '.rev.jump.int'
  'bms'
with calls to .Internal functions
  'crossprod' 'runif' 'tcrossprod'

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking for left-overs from vignette generation ... WARNING
  file 'inst/doc/Rplots.ps' will not be installed: please remove it
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:

  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
** running examples for arch 'x64' ... WARNING
Found the following significant warnings:

  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
  Warning: sd(<data.frame>) is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... OK
* checking PDF version of manual ... OK
WARNING: There were 3 warnings.
NOTE: There were 2 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/BMS.Rcheck/00check.log'
for details.