* using log directory 'd:/Rcompile/CRANpkg/local/2.15/LifeTables.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'LifeTables/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'LifeTables' version '0.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. CRAN requires a NAMESPACE file for all submissions. * checking whether package 'LifeTables' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE create.help.button : : warning in ghelp(topic = topic, package = package, cont = gwindow(parent = parent.window, width = 700, height = 700)): partial argument match of 'cont' to 'container' create.help.button: warning in gbutton(action = helpaction, cont = parent.group): partial argument match of 'cont' to 'container' create.plot.window: warning in ggroup(cont = win, horizontal = FALSE, expand = TRUE): partial argument match of 'cont' to 'container' create.plot.window: warning in ggroup(cont = g, horizontal = TRUE): partial argument match of 'cont' to 'container' create.plot.window: warning in glabel("Output type:", cont = g1): partial argument match of 'cont' to 'container' create.plot.window: warning in gdroplist(c("pdf", "postscript", "png", "jpeg", "tiff", "bmp"), cont = g1): partial argument match of 'cont' to 'container' create.plot.window: warning in gbutton("Save", cont = g1): partial argument match of 'cont' to 'container' create.plot.window: warning in ggroup(cont = g, horizontal = TRUE, expand = TRUE): partial argument match of 'cont' to 'container' create.plot.window: warning in ggraphics(cont = g2, ps = ps, dpi = dpi, ...): partial argument match of 'cont' to 'container' generateLT: warning in ggroup(horizontal = FALSE, cont = win): partial argument match of 'cont' to 'container' generateLT: warning in ggroup(horizontal = TRUE, cont = g): partial argument match of 'cont' to 'container' generateLT: warning in glabel("e0:", cont = par.g): partial argument match of 'cont' to 'container' generateLT: warning in gedit(width = 10, cont = par.g): partial argument match of 'cont' to 'container' generateLT: warning in glabel("alpha:", cont = par.g): partial argument match of 'cont' to 'container' generateLT: warning in gedit(0, width = 10, cont = par.g): partial argument match of 'cont' to 'container' generateLT: warning in glabel(" Changing values of e0 or alpha will update the life table.", cont = par.g): partial argument match of 'cont' to 'container' generateLT: warning in gtable(life.table$lt, cont = g, expand = TRUE): partial argument match of 'cont' to 'container' generateLT: warning in gbutton("Cancel", handler = function(h, ...) dispose(win), cont = button.g): partial argument match of 'cont' to 'container' generateLT: warning in gdroplist(plot.colnames, selected = which(plot.colnames == plot.defaults$lt.col), cont = button.g): partial argument match of 'cont' to 'container' generateLT: warning in gcheckbox("Log scale", checked = plot.defaults$log, cont = button.g, anchor = c(-1, 0)): partial argument match of 'cont' to 'container' generateLT: warning in gbutton(action = gaction(label = " Plot ", icon = "newplot", handler = plotLTcolumn, action = list(mw = win, env = e)), cont = button.g): partial argument match of 'cont' to 'container' generateLT: warning in gbutton(action = gaction(label = " Export ", icon = "save", handler = exportLT, action = list(mw = win, env = e)), cont = button.g): partial argument match of 'cont' to 'container' hmd.DA: no visible binding for global variable 'hmd.1m0.train.m' hmd.DA: no visible binding for global variable 'hmd.5m0.train.m' hmd.DA: no visible binding for global variable 'hmd.1q0.train.m' hmd.DA: no visible binding for global variable 'hmd.5q0.train.m' hmd.DA: no visible binding for global variable 'hmd.1m0a.train.m' hmd.DA: no visible binding for global variable 'hmd.5m0a.train.m' hmd.DA: no visible binding for global variable 'hmd.1q0a.train.m' hmd.DA: no visible binding for global variable 'hmd.5q0a.train.m' hmd.DA: no visible binding for global variable 'hmd.1m0.train.f' hmd.DA: no visible binding for global variable 'hmd.5m0.train.f' hmd.DA: no visible binding for global variable 'hmd.1q0.train.f' hmd.DA: no visible binding for global variable 'hmd.5q0.train.f' hmd.DA: no visible binding for global variable 'hmd.1m0a.train.f' hmd.DA: no visible binding for global variable 'hmd.5m0a.train.f' hmd.DA: no visible binding for global variable 'hmd.1q0a.train.f' hmd.DA: no visible binding for global variable 'hmd.5q0a.train.f' hmd.DA.mx: no visible binding for global variable 'mlt.mx' hmd.DA.mx: no visible binding for global variable 'flt.mx' hmd.DA.mx: no visible binding for global variable 'class5' modelLT.gui: warning in ggroup(horizontal = FALSE, cont = main.win): partial argument match of 'cont' to 'container' modelLT.gui: warning in gframe("Life Table Settings", markup = TRUE, horizontal = FALSE, cont = main.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in glayout(cont = family.f): partial argument match of 'cont' to 'container' modelLT.gui: warning in glabel("Indicator:", cont = indicator.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in gdroplist(indicators, cont = indicator.g, selected = defaults$child.mort): partial argument match of 'cont' to 'container' modelLT.gui: warning in glabel(" ", cont = indicator.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in gedit(width = 10, cont = indicator.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in glabel("Add adult mortality:", cont = indicator.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in gcheckbox("45q15", checked = !is.null(defaults$adult.mort), cont = indicator.g, handler = function(h, ...) {: partial argument match of 'cont' to 'container' modelLT.gui: warning in enabled(e$admort.value) <- svalue(h$obj): partial argument match of 'cont' to 'container' modelLT.gui: warning in }): partial argument match of 'cont' to 'container' modelLT.gui: warning in gedit(if (is.null(defaults$adult.mort)) "" else defaults$adult.mort, width = 10, cont = indicator.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in glabel("Sex:", cont = indicator.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in gdroplist(sex.values, cont = indicator.g, selected = which(sex.values == defaults$sex)): partial argument match of 'cont' to 'container' modelLT.gui: warning in ggroup(horizontal = TRUE, cont = main.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in gbutton("Quit", handler = quit.modelLT, cont = button.g): partial argument match of 'cont' to 'container' modelLT.gui: warning in gbutton(action = gaction(label = " Generate Life Table ", icon = "dataframe", handler = generateLT, action = list(mw = main.win, env = e)), cont = button.g): partial argument match of 'cont' to 'container' mortmod: no visible binding for global variable 'lo.devs' mortmod: no visible binding for global variable 'averages.smooth' mortmod: no visible binding for global variable 'hi.devs' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress MLTobs.RData 611Kb 412Kb xz * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK WARNING: There was 1 warning. NOTE: There were 2 notes. See 'd:/Rcompile/CRANpkg/local/2.15/LifeTables.Rcheck/00check.log' for details.