* using log directory 'd:/Rcompile/CRANpkg/local/2.15/Rcell.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'Rcell/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Rcell' version '1.1-8' * package encoding: latin1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'Rcell' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared object 'd:/RCompile/CRANpkg/lib/2.15/EBImage/libs/x64/EBImage.dll': LoadLibrary failure: %1 ist keine zulässige Win32-Anwendung. .axis: no visible global function definition for 'Image' .axis: no visible binding for global variable 'img_coord' .axis: no visible binding for global variable 'pos' .axis: no visible binding for global variable 'cellID' .axis: no visible global function definition for 'drawtext' .axis: no visible global function definition for 'drawfont' .axis: no visible global function definition for 'rotate' .grid: no visible binding for global variable 'factor_id_x' .grid: no visible binding for global variable 'factor_id_y' .grid: no visible binding for global variable 'factor_id' .grid: no visible binding for global variable 'factor_x' .grid: no visible binding for global variable 'factor_y' .restructure.split.image: no visible binding for global variable 'cellID' .restructure.split.image: no visible binding for global variable 'posfix' .restructure.split.image: no visible binding for global variable 'name' .sample.N.ucid: no visible binding for global variable 'ucid' .wrap: no visible binding for global variable 'factor_id' QC.execute: no visible binding for global variable 'QC' [.cell.data: no visible binding for global variable 'QC' append.anular.c: no visible binding for global variable 'f.tot.p1.c' append.anular.c: no visible binding for global variable 'f.tot.c' append.anular.c: no visible binding for global variable 'f.tot.m1.c' append.anular.c: no visible binding for global variable 'f.tot.m2.c' append.anular.c: no visible binding for global variable 'f.tot.m3.c' append.anular.c: no visible binding for global variable 'a.tot.p1' append.anular.c: no visible binding for global variable 'a.tot' append.anular.c: no visible binding for global variable 'a.tot.m1' append.anular.c: no visible binding for global variable 'a.tot.m2' append.anular.c: no visible binding for global variable 'a.tot.m3' append.anular.r: no visible binding for global variable 'f.tot.p1.r' append.anular.r: no visible binding for global variable 'f.tot.r' append.anular.r: no visible binding for global variable 'f.tot.m1.r' append.anular.r: no visible binding for global variable 'f.tot.m2.r' append.anular.r: no visible binding for global variable 'f.tot.m3.r' append.anular.r: no visible binding for global variable 'a.tot.p1' append.anular.r: no visible binding for global variable 'a.tot' append.anular.r: no visible binding for global variable 'a.tot.m1' append.anular.r: no visible binding for global variable 'a.tot.m2' append.anular.r: no visible binding for global variable 'a.tot.m3' append.anular.y: no visible binding for global variable 'f.tot.p1.y' append.anular.y: no visible binding for global variable 'f.tot.y' append.anular.y: no visible binding for global variable 'f.tot.m1.y' append.anular.y: no visible binding for global variable 'f.tot.m2.y' append.anular.y: no visible binding for global variable 'f.tot.m3.y' append.anular.y: no visible binding for global variable 'a.tot.p1' append.anular.y: no visible binding for global variable 'a.tot' append.anular.y: no visible binding for global variable 'a.tot.m1' append.anular.y: no visible binding for global variable 'a.tot.m2' append.anular.y: no visible binding for global variable 'a.tot.m3' append.in.focus: no visible binding for global variable 'pos' append.in.focus: no visible binding for global variable 'z.scan' append.memRec.y: no visible binding for global variable 'f.tot.m3.y' append.memRec.y: no visible binding for global variable 'a.tot.m3' append.memRec.y: no visible binding for global variable 'f.local.bg.y' append.memRec.y: no visible binding for global variable 'maj.axis' append.memRec.y: no visible binding for global variable 'min.axis' append.memRec.y: no visible binding for global variable 'f.m2.y' append.memRec.y: no visible binding for global variable 'a.m2' append.memRec.y: no visible binding for global variable 'f.m1.y' append.memRec.y: no visible binding for global variable 'a.m1' append.memRec.y: no visible binding for global variable 'f.m0.y' append.memRec.y: no visible binding for global variable 'a.m0' append.memRec.y: no visible binding for global variable 'f.p1.y' append.memRec.y: no visible binding for global variable 'a.p1' append.memRec.y: no visible binding for global variable 'f.mem.y' append.memRec.y: no visible binding for global variable 'f.int.y' append.oif.interval: no visible binding for global variable 'pos' append.oif.time: warning in chron(times = substring(oif[oif.s + 1, ], 32, 40), format = c("h:m:s")): partial argument match of 'times' to 'times.' append.oif.time: no visible binding for global variable 'pos' append.oif.time: no visible binding for global variable 'oif.hour' append.oif.time: no visible binding for global variable 'oif.msec' append.oif.time: no visible binding for global variable 'D.oif.hour' append.oif.time: no visible binding for global variable 'D.oif.msec' append.oif.time: no visible binding for global variable 'oif.time.s' append.z.scan: no visible binding for global variable 'pos' append.z.scan : : no visible binding for global variable 'time.index' append.z.scan: no visible binding for global variable 't.frame' append.z.scan: no visible binding for global variable 'time.index' append.z.scan: no visible binding for global variable 'z.scan' append.z.scan: no visible binding for global variable 'z.slice' append.z.scan: no visible binding for global variable 'oif' as.cell.data.default: no visible binding for global variable 'fluor' as.cell.data.default: no visible binding for global variable 'bright' as.cell.data.list: no visible binding for global variable 'fluor' as.cell.data.list: no visible binding for global variable 'bright' calc.dist.matrix: no visible binding for global variable 'QC' cell.hclust: no visible binding for global variable 'subtree' cell.hclust: no visible binding for global variable 'subtree.n.cell' chclust: no visible binding for global variable 'subtree' chclust: no visible binding for global variable 'subtree.n.cell' cimage.cell.image: no visible global function definition for 'tile' cimage.cell.image: no visible global function definition for 'normalize' cimage.cell.image: no visible binding for global variable 'facet_id' cimage.cell.image : : no visible global function definition for 'Image' cimage.cell.image: no visible global function definition for 'Image' cimage.cell.image: no visible global function definition for 'drawtext' cimage.cell.image: no visible global function definition for 'drawfont' cimage.cell.image: no visible binding for global variable 'facet_x' cimage.cell.image: no visible binding for global variable 'facet_y' creshape: no visible binding for global variable 'QC' drawCross: no visible binding for global variable 'Color' drawLine: no visible binding for global variable 'Color' get.cell.image.cell.data: no visible binding for global variable 'QC' get.cell.image.data.frame: no visible binding for global variable 'path.image' get.cell.image.data.frame: no visible global function definition for 'readImage' img.desc: no visible global function definition for 'is.Image' load.cell.data: warning in read.table(fname, sep = "\t", head = TRUE, colClasses = "numeric"): partial argument match of 'head' to 'header' load.cell.data: warning in read.table(fname2, sep = "\t", head = TRUE, as.is = TRUE): partial argument match of 'head' to 'header' load.cell.data: no visible binding for global variable 'cellID' load.cell.data: no visible binding for global variable 'pos' load.cell.data: no visible binding for global variable 'flag' load.cell.data: no visible binding for global variable 'fluor' load.cell.data: no visible binding for global variable 'bright' load.cellID.data: warning in read.table(fname, sep = "\t", head = TRUE, colClasses = "numeric"): partial argument match of 'head' to 'header' load.cellID.data: warning in read.table(fname2, sep = "\t", head = TRUE, as.is = TRUE): partial argument match of 'head' to 'header' load.cellID.data: no visible binding for global variable 'cellID' load.cellID.data: no visible binding for global variable 'pos' load.cellID.data: no visible binding for global variable 'flag' load.cellID.data: no visible binding for global variable 'fluor' load.cellID.data: no visible binding for global variable 'bright' load.pdata: warning in read.table(file = paste(path, "/", pdata, sep = ""), head = TRUE): partial argument match of 'head' to 'header' print.summary.cell.data: no visible binding for global variable 'undo' print.summary.cell.data: no visible binding for global variable 'type' print.summary.cell.data: no visible binding for global variable 'cer' print.summary.cell.data: no visible binding for global variable 'can.undo' print.summary.cell.data: no visible binding for global variable 'exclude.vars' reshape.cell.data: no visible binding for global variable 'QC' select.cells: no visible binding for global variable 'QC' show.image: no visible binding for global variable 'QC' show.image: no visible binding for global variable 'cellID' show.image: no visible binding for global variable 'xpos' show.image: no visible binding for global variable 'ypos' show.img: no visible binding for global variable 'QC' show.img: no visible binding for global variable 'cellID' show.img: no visible binding for global variable 'xpos' show.img: no visible binding for global variable 'ypos' subset.cell.data: no visible binding for global variable 'QC' summary.cell.data: no visible binding for global variable '.id' transform.by.cell.data: no visible binding for global variable 'QC' update.n.tot: no visible binding for global variable 'ucid' with.cell.data: no visible binding for global variable 'QC' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'transform': 'transform.by' S3 methods shown with full name in documentation object 'update.n.tot': 'update.n.tot' The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK NOTE: There were 2 notes. See 'd:/Rcompile/CRANpkg/local/2.15/Rcell.Rcheck/00check.log' for details.