CRAN Package Check Results for Package Haplin

Last updated on 2015-06-30 07:47:57.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.5 3.65 58.01 61.66 NOTE
r-devel-linux-x86_64-debian-gcc 5.5 3.58 53.75 57.33 NOTE
r-devel-linux-x86_64-fedora-clang 5.5 119.85 OK
r-devel-linux-x86_64-fedora-gcc 5.5 110.84 OK
r-devel-osx-x86_64-clang 5.5 107.28 OK
r-devel-windows-ix86+x86_64 5.5 17.00 73.00 90.00 NOTE
r-patched-linux-x86_64 5.5 3.60 54.82 58.42 OK
r-patched-solaris-sparc 5.5 718.70 OK
r-patched-solaris-x86 5.5 150.60 OK
r-release-linux-x86_64 5.5 3.75 58.10 61.85 OK
r-release-osx-x86_64-mavericks 5.5 OK
r-release-windows-ix86+x86_64 5.5 13.00 83.00 96.00 OK
r-oldrel-windows-ix86+x86_64 5.5 16.00 108.00 124.00 OK

Check Details

Version: 5.5
Check: R code for possible problems
Result: NOTE
    coef.tri.glm: no visible global function definition for ‘summary.glm’
    convertPed: no visible global function definition for ‘read.table’
    convertPed: no visible global function definition for ‘write.table’
    f.HWE: no visible global function definition for ‘na.omit’
    f.HWE: no visible global function definition for ‘pchisq’
    f.QQconf: no visible global function definition for ‘runif’
    f.Rplot : .f.segments.rest: no visible global function definition for
     ‘segments’
    f.Rplot: no visible global function definition for ‘points’
    f.check.pars: no visible global function definition for ‘file_test’
    f.debug.pvalues: no visible global function definition for ‘pdf’
    f.debug.pvalues: no visible global function definition for ‘dev.off’
    f.debug.pvalues: no visible global function definition for ‘par’
    f.debug.pvalues : <anonymous>: no visible global function definition
     for ‘ecdf’
    f.debug.pvalues : <anonymous>: no visible global function definition
     for ‘plot’
    f.debug.pvalues : <anonymous>: no visible global function definition
     for ‘lines’
    f.debug.pvalues: no visible global function definition for
     ‘write.table’
    f.like.ratio: no visible global function definition for ‘anova’
    f.like.ratio: no visible global function definition for ‘pchisq’
    f.make.design: no visible global function definition for ‘model.matrix’
    f.make.design: no visible global function definition for ‘formula’
    f.plot.effects: no visible global function definition for ‘par’
    f.plot.effects: no visible global function definition for ‘strwidth’
    f.plot.effects: no visible global function definition for ‘plot’
    f.plot.effects: no visible global function definition for ‘axis’
    f.plot.effects: no visible global function definition for ‘mtext’
    f.plot.effects: no visible global function definition for ‘grey’
    f.plot.effects: no visible global function definition for ‘abline’
    f.plot.effects: no visible global function definition for ‘rect’
    f.post.chisq: no visible global function definition for ‘pchisq’
    f.posttest.score: no visible binding for global variable ‘coef’
    f.posttest.score: no visible global function definition for ‘pchisq’
    f.rand.geno: no visible global function definition for ‘rbinom’
    f.read.data: no visible global function definition for ‘read.table’
    f.scoretest: no visible global function definition for ‘pchisq’
    f.sel.haplos: no visible global function definition for ‘read.table’
    f.suest: no visible global function definition for ‘cov’
    f.suest : .f.test: no visible global function definition for ‘pchisq’
    f.suest: no visible global function definition for ‘par’
    f.suest: no visible global function definition for ‘hist’
    f.suest: no visible global function definition for ‘pairs’
    f.suest: no visible binding for global variable ‘hist’
    f.tri.glm: no visible global function definition for ‘formula’
    f.tri.glm: no visible global function definition for ‘glm’
    f.tri.glm: no visible binding for global variable ‘poisson’
    f.tri.glm: no visible global function definition for ‘predict’
    gwaaToHaplin: no visible global function definition for ‘read.table’
    haplin: no visible global function definition for ‘plot’
    haplinStrat: no visible global function definition for ‘write.table’
    haplinTDT: no visible global function definition for ‘plot’
    output: no visible global function definition for ‘capture.output’
    output: no visible global function definition for ‘jpeg’
    output: no visible global function definition for ‘plot’
    output: no visible global function definition for ‘dev.off’
    pQQ: no visible global function definition for ‘qbeta’
    pQQ: no visible global function definition for ‘approxfun’
    pQQ: no visible global function definition for ‘plot’
    pQQ: no visible global function definition for ‘approx’
    pQQ: no visible global function definition for ‘segments’
    pQQ: no visible global function definition for ‘lines’
    pQQ: no visible global function definition for ‘points’
    pQQ: no visible global function definition for ‘box’
    pQQ: no visible global function definition for ‘abline’
    pQQ: no visible global function definition for ‘text’
    pedToHaplin: no visible global function definition for ‘read.table’
    pedToHaplin: no visible global function definition for ‘write.table’
    plot.haplin: no visible global function definition for ‘par’
    plot.haplin: no visible global function definition for ‘png’
    plot.haplin: no visible global function definition for ‘jpeg’
    plot.haplin: no visible global function definition for ‘dev.off’
    plot.haplinTDT: no visible global function definition for ‘par’
    plot.haplinTDT: no visible global function definition for ‘png’
    plot.haplinTDT: no visible global function definition for ‘jpeg’
    plot.haplinTDT: no visible global function definition for ‘pdf’
    plot.haplinTDT: no visible global function definition for ‘plot’
    plot.haplinTDT: no visible global function definition for ‘dev.off’
    plot.haptable: no visible global function definition for ‘na.omit’
    plot.haptable: no visible global function definition for ‘par’
    plot.haptable: no visible global function definition for ‘png’
    plot.haptable: no visible global function definition for ‘jpeg’
    plot.haptable: no visible global function definition for ‘dev.off’
    plot.tdt: no visible global function definition for ‘plot’
    plot.tdt: no visible global function definition for ‘points’
    plot.tdt: no visible global function definition for ‘abline’
    plot.tdt: no visible global function definition for ‘legend’
    postTest: no visible binding for global variable ‘coef’
    prepPed: no visible global function definition for ‘write.table’
    print.suest: no visible global function definition for ‘str’
    snpPos: no visible global function definition for ‘read.table’
    snpPower : or.power: no visible global function definition for ‘pnorm’
    snpPower : or.power: no visible global function definition for ‘qnorm’
    snpSampleSize : or.power: no visible global function definition for
     ‘pnorm’
    snpSampleSize : or.power: no visible global function definition for
     ‘qnorm’
    snpSampleSize : upper.limit: no visible global function definition for
     ‘qnorm’
    snpSampleSize : <anonymous>: no visible global function definition for
     ‘uniroot’
    summary.tri.glm : .f.quant: no visible global function definition for
     ‘quantile’
    summary.tri.glm : <anonymous>: no visible global function definition
     for ‘median’
    tdt.basic: no visible global function definition for ‘pchisq’
    textlabel: no visible global function definition for ‘grey’
    textlabel: no visible global function definition for ‘strwidth’
    textlabel: no visible global function definition for ‘strheight’
    textlabel: no visible global function definition for ‘xy.coords’
    textlabel: no visible global function definition for ‘rect’
    textlabel: no visible global function definition for ‘text’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64