CRAN Package Check Results for Package Haplin

Last updated on 2014-08-28 09:48:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.3 5.06 60.13 65.20 NOTE
r-devel-linux-x86_64-debian-gcc 5.3 4.75 59.42 64.17 NOTE
r-devel-linux-x86_64-fedora-clang 5.3 151.16 NOTE
r-devel-linux-x86_64-fedora-gcc 5.3 146.63 NOTE
r-devel-osx-x86_64-clang 5.3 113.10 NOTE
r-devel-windows-ix86+x86_64 5.3 13.00 92.00 105.00 NOTE
r-patched-linux-x86_64 5.3 5.02 65.24 70.26 NOTE
r-patched-solaris-sparc 5.3 886.40 NOTE
r-patched-solaris-x86 5.3 189.30 NOTE
r-release-linux-ix86 5.3 6.22 77.76 83.98 NOTE
r-release-linux-x86_64 5.3 5.27 65.32 70.60 NOTE
r-release-osx-x86_64-mavericks 5.3 NOTE
r-release-osx-x86_64-snowleopard 5.3 ERROR
r-release-windows-ix86+x86_64 5.3 14.00 87.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 5.3 12.00 96.00 108.00 NOTE

Check Details

Version: 5.3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘MASS’ ‘mgcv’ ‘parallel’ ‘GenABEL’ ‘DatABEL’ ‘tools’ ‘filehash’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 5.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘filehash’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘DatABEL’ ‘GenABEL’ ‘MASS’ ‘filehash’ ‘mgcv’ ‘parallel’ ‘tools’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported objects imported by ':::' calls:
     ‘parallel:::closeNode’ ‘parallel:::postNode’ ‘parallel:::recvResult’
     ‘parallel:::sendCall’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 5.3
Check: R code for possible problems
Result: NOTE
    f.check.pars: no visible global function definition for ‘nsnps’
    f.check.pars: no visible global function definition for ‘phdata’
    f.get.marker.names: no visible global function definition for
     ‘snpnames’
    f.load: no visible global function definition for ‘dbInit’
    f.load: no visible global function definition for ‘dbMultiFetch’
    f.save : .f.dump: no visible global function definition for ‘dumpDF’
    f.save: no visible global function definition for ‘sfInit’
    f.save: no visible global function definition for ‘sfStop’
    f.save: no visible global function definition for ‘sfLapply’
    f.suest: no visible global function definition for ‘mroot’
    f.suest: no visible global function definition for ‘mvrnorm’
    gwaaToHaplin: no visible global function definition for ‘phdata’
    haplinSlide: no visible global function definition for ‘makeCluster’
    haplinSlide: no visible global function definition for ‘parLapply’
    prepPed: no visible global function definition for ‘file_path_sans_ext’
    prepPed: no visible global function definition for
     ‘extract_text_file_columns’
    summary.tri.glm: no visible global function definition for ‘mvrnorm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 5.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘filehash’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘DatABEL’ ‘GenABEL’ ‘MASS’ ‘filehash’ ‘mgcv’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported objects imported by ':::' calls:
     ‘parallel:::closeNode’ ‘parallel:::postNode’ ‘parallel:::recvResult’
     ‘parallel:::sendCall’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard