CRAN Package Check Results for Package penalized

Last updated on 2014-07-28 03:49:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-42 1.19 98.88 100.07 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-42 1.14 98.16 99.30 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-42 214.92 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-42 202.65 NOTE
r-devel-osx-x86_64-clang 0.9-42 158.24 NOTE
r-devel-windows-ix86+x86_64 0.9-42 4.00 137.00 141.00 NOTE
r-patched-linux-x86_64 0.9-42 1.22 94.96 96.17 NOTE
r-patched-solaris-sparc 0.9-42 1081.00 NOTE
r-patched-solaris-x86 0.9-42 238.70 NOTE
r-release-linux-ix86 0.9-42 1.59 109.45 111.04 NOTE
r-release-linux-x86_64 0.9-42 1.18 93.69 94.87 NOTE
r-release-osx-x86_64-mavericks 0.9-42 WARN
r-release-windows-ix86+x86_64 0.9-42 5.00 130.00 135.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9-42 3.00 205.00 208.00 NOTE

Check Details

Version: 0.9-42
Check: DESCRIPTION meta-information
Result: NOTE
    Package listed in more than one of Depends, Imports, Suggests, Enhances:
     survival
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-42
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: methods
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-42
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     changelog.txt
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9-42
Check: Rd line widths
Result: NOTE
    Rd file 'cvl.Rd':
     \usage lines wider than 90 characters:
     fusedl = FALSE, positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
     fusedl = FALSE,positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
     fusedl = FALSE,positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9-42
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: globaltest
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in penalized.Rnw
     ...
    # nonzero coefficients: 11
    # nonzero coefficients: 11
    # nonzero coefficients: 11
    
    
    > library(globaltest)
    
     When sourcing penalized.R :
    Error: there is no package called globaltest
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Loading required package: splines
    Welcome to penalized. For extended examples, see vignette("penalized").
    
    Error: processing vignette 'penalized.Rnw' failed with diagnostics:
     chunk 31 (label = globaltest)
    Error in library(globaltest) : there is no package called globaltest
    Execution halted
Flavor: r-release-osx-x86_64-mavericks