CRAN Package Check Results for Package penalized

Last updated on 2015-08-01 06:48:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-45 0.92 62.61 63.53 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-45 0.90 60.52 61.42 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-45 124.56 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-45 120.41 NOTE
r-devel-osx-x86_64-clang 0.9-45 105.54 OK
r-devel-windows-ix86+x86_64 0.9-45 6.00 121.00 127.00 NOTE
r-patched-linux-x86_64 0.9-45 1.10 62.04 63.14 OK
r-patched-solaris-sparc 0.9-45 797.90 OK
r-patched-solaris-x86 0.9-45 171.90 OK
r-release-linux-x86_64 0.9-45 0.97 62.04 63.01 OK
r-release-osx-x86_64-mavericks 0.9-45 WARN
r-release-windows-ix86+x86_64 0.9-45 9.00 88.00 97.00 OK
r-oldrel-windows-ix86+x86_64 0.9-45 5.00 109.00 114.00 OK

Check Details

Version: 0.9-45
Check: R code for possible problems
Result: NOTE
    .checkinput: no visible global function definition for ‘terms’
    .checkinput: no visible global function definition for ‘model.offset’
    .checkinput: no visible global function definition for ‘model.frame’
    .checkinput: no visible global function definition for ‘model.matrix’
    .checkinput: no visible global function definition for ‘glm’
    .checkinput: no visible binding for global variable ‘binomial’
    .checkinput: no visible global function definition for ‘lm’
    .checkinput: no visible binding for global variable ‘poisson’
    .checkinput: no visible binding for global variable ‘var’
    .cvl : <anonymous>: no visible global function definition for
     ‘flush.console’
    .lasso: no visible global function definition for ‘flush.console’
    .ridge: no visible global function definition for ‘flush.console’
    contr.none: no visible global function definition for ‘contr.treatment’
    optL1 : thiscvl: no visible global function definition for
     ‘flush.console’
    optL2 : thiscvl: no visible global function definition for
     ‘flush.console’
    plotpath: no visible global function definition for ‘strwidth’
    plotpath: no visible global function definition for ‘par’
    plotpath: no visible global function definition for ‘matplot’
    plotpath: no visible global function definition for ‘rainbow’
    plotpath: no visible global function definition for ‘axis’
    profL1: no visible global function definition for ‘flush.console’
    profL2: no visible global function definition for ‘flush.console’
    plot,breslow: no visible global function definition for ‘lines’
    predict,penfit: no visible global function definition for ‘terms’
    predict,penfit: no visible global function definition for
     ‘model.offset’
    predict,penfit: no visible global function definition for ‘model.frame’
    predict,penfit: no visible global function definition for
     ‘model.matrix’
    Undefined global functions or variables:
     axis binomial contr.treatment flush.console glm lines lm matplot
     model.frame model.matrix model.offset par poisson rainbow strwidth
     terms var
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "axis", "lines", "matplot", "par", "strwidth")
     importFrom("stats", "binomial", "contr.treatment", "glm", "lm",
     "model.frame", "model.matrix", "model.offset", "poisson",
     "terms", "var")
     importFrom("utils", "flush.console")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.9-45
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘penalized.Rnw’
     ...
    + fusedl = chr)
    
    
    > library(globaltest)
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     there is no package called ‘annotate’
    
     When sourcing ‘penalized.R’:
    Error: package or namespace load failed for ‘globaltest’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-45
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Welcome to penalized. For extended examples, see vignette("penalized").
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     there is no package called ‘annotate’
    
    Error: processing vignette 'penalized.Rnw' failed with diagnostics:
     chunk 31 (label = globaltest)
    Error : package or namespace load failed for ‘globaltest’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks