|
| abc | Tools for Approximate Bayesian Computation (ABC) |
| abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance
Analysis with this package |
| abd | The Analysis of Biological Data |
| abind | Combine multi-dimensional arrays |
| abn | Data Modelling with Additive Bayesian Networks |
| AcceptanceSampling | Creation and evaluation of Acceptance Sampling Plans |
| ACCLMA | ACC & LMA Graph Plotting |
| accuracy | Tools for testing and improving accuracy of statistical results |
| Ace | Assay-based Cross-sectional Estimation of incidence rates |
| acepack | ace() and avas() for selecting regression transformations |
| acer | The ACER Method for Extreme Value Estimation |
| aCGH.Spline | Robust spline interpolation for dual color array comparative
genomic hybridisation data |
| ACNE | Affymetrix SNP probe-summarization using non-negative matrix
factorization |
| acs | Download and manipulate data from the US Census American
Community Survey |
| actuar | Actuarial functions |
| ada | ada: an R package for stochastic boosting |
| adabag | Applies AdaBoost.M1, AdaBoost-SAMME and Bagging |
| adagio | Discrete and Global Optimization Routines |
| AdaptFit | Adaptive Semiparametic Regression |
| AdaptFitOS | Adaptive Semiparametric Regression with Simultaneous Confidence
Bands |
| adaptivetau | Tau-leaping stochastic simulation |
| adaptMCMC | Implementation of a generic adaptive Monte Carlo Markov Chain
sampler |
| adaptTest | Adaptive two-stage tests |
| ade4 | Analysis of Ecological Data : Exploratory and Euclidean methods
in Environmental sciences |
| ade4TkGUI | ade4 Tcl/Tk Graphical User Interface |
| adegenet | adegenet: an R package for the exploratory analysis of genetic
and genomic data |
| adehabitat | Analysis of habitat selection by animals |
| adehabitatHR | Home range Estimation |
| adehabitatHS | Analysis of habitat selection by animals |
| adehabitatLT | Analysis of animal movements |
| adehabitatMA | Tools to Deal with Raster Maps |
| adephylo | adephylo: exploratory analyses for the phylogenetic comparative
method |
| ADGofTest | Anderson-Darling GoF test |
| adimpro | Adaptive Smoothing of Digital Images |
| adk | Anderson-Darling K-Sample Test and Combinations of Such Tests |
| adlift | An adaptive lifting scheme algorithm |
| ADM3 | An Interpretation of the ADM method - automated detection
algorithm |
| AdMit | Adaptive Mixture of Student-t distributions |
| ads | Spatial point patterns analysis |
| AER | Applied Econometrics with R |
| afc | Calculate afc |
| afmtools | Estimation, Diagnostic and Forecasting Functions for ARFIMA
models |
| AGD | Analysis of Growth Data |
| ageprior | Prior distributions for molecular dating |
| aggrisk | Estimate individual level risk using individual case data and
spatially aggregated control data |
| agilp | Extracting and preprocessing Agilent express arrays |
| Agreement | Statistical Tools for Measuring Agreement |
| agricolae | Statistical Procedures for Agricultural Research |
| agridat | Agricultural datasets |
| AGSDest | Estimation in adaptive group sequential trials |
| ahaz | Regularization for semiparametric additive hazards regression |
| AICcmodavg | Model selection and multimodel inference based on (Q)AIC(c) |
| AIGIS | Areal Interpolation for GIS data |
| AIM | AIM: adaptive index model |
| akima | Interpolation of irregularly spaced data |
| alabama | Constrained nonlinear optimization |
| AlgDesign | Algorithmic Experimental Design |
| allan | Automated Large Linear Analysis Node |
| allanvar | Allan Variance Analysis |
| allelematch | Identifying unique multilocus genotypes where genotyping error
and missing data may be present |
| allelic | A fast, unbiased and exact allelic exact test |
| AllPossibleSpellings | Computes all of a word's possible spellings |
| alphahull | Generalization of the convex hull of a sample of points in the
plane |
| alphashape3d | Implementation of the 3D alpha-shape for the reconstruction of
3D sets from a point cloud |
| alr3 | Data to accompany Applied Linear Regression 3rd edition |
| ALS | multivariate curve resolution alternating least squares
(MCR-ALS) |
| AMA | Anderson-Moore Algorithm |
| amap | Another Multidimensional Analysis Package |
| amba | Additive Models for Business Applications |
| amei | Adaptive Management of Epidemiological Interventions |
| Amelia | Amelia II: A Program for Missing Data |
| amer | Additive mixed models with lme4 |
| AmericanCallOpt | This package includes pricing function for selected American
call options with underlying assets that generate payouts |
| AMORE | A MORE flexible neural network package |
| anacor | Simple and Canonical Correspondence Analysis |
| anaglyph | 3D Anaglyph Plots |
| analogue | Analogue and weighted averaging methods for palaeoecology |
| AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE or
NIFTI format |
| anapuce | Tools for microarray data analysis |
| anchors | Statistical analysis of surveys with anchoring vignettes |
| andrews | Andrews curves |
| anesrake | ANES Raking Implementation |
| Animal | Analyze time-coded animal behavior data |
| animation | A Gallery of Animations in Statistics and Utilities to Create
Animations |
| anm | Analog model for downscaling |
| ANN | Feedforward Artificial Neural Network optimized by Genetic
Algorithm |
| AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific
annotation file |
| anoint | Analysis of interactions |
| ant | Version of ant specific to R |
| aod | Analysis of Overdispersed Data |
| apcluster | Affinity Propagation Clustering |
| ape | Analyses of Phylogenetics and Evolution |
| aplpack | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and
some slider functions |
| appell | Compute Appell's F1 hypergeometric function |
| apple | Approximate Path for Penalized Likelihood Estimators |
| approximator | Bayesian prediction of complex computer codes |
| APSIMBatch | Analysis the output of Apsim software |
| apsrtable | apsrtable model-output formatter for social science |
| apt | Asymmetric Price Transmission (apt) |
| apTreeshape | Analyses of Phylogenetic Treeshape |
| aqfig | Functions to help display air quality model output and
monitoring data |
| aqp | Algorithms for Quantitative Pedology |
| AquaEnv | AquaEnv - an integrated development toolbox for aquatic chemical
model generation |
| aratio | Assessment ratio analysis |
| archetypes | Archetypal Analysis |
| ares | Environment air pollution epidemiology: a library for time
series analysis |
| arf3DS4 | Activated Region Fitting, fMRI data analysis (3D) |
| argosfilter | Argos locations filter |
| arm | Data Analysis Using Regression and Multilevel/Hierarchical
Models |
| aroma.affymetrix | Analysis of large Affymetrix microarray data sets |
| aroma.apd | A probe-level data file format used by aroma.affymetrix
[DEPRECATED] |
| aroma.cn | Copy-number analysis of large microarray data sets |
| aroma.core | Core methods and classes used by aroma.* packages part of The
Aroma Framework |
| arrayhelpers | Convenience functions for arrays |
| ars | Adaptive Rejection Sampling |
| ARTIVA | Infer a time-varying DBN network from time series data |
| arules | Mining Association Rules and Frequent Itemsets |
| arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |
| arulesSequences | Mining frequent sequences |
| arulesViz | arulesViz - Visualizing Association Rules and Frequent Itemsets |
| asbio | A collection of statistical tools for biologists |
| ascii | Export R objects to several markup languages |
| ascrda | Augmented SCRDA |
| asd | Simulations for adaptive seamless designs |
| ash | David Scott's ASH routines |
| aspace | A collection of functions for estimating centrographic
statistics and computational geometries for spatial point
patterns |
| aspect | Aspects of Multivariables |
| assist | A Suite of S-Plus Functions Implementing Smoothing Splines |
| AssotesteR | Statistical Tests for Genetic Association Studies |
| aster | Aster Models |
| aster2 | Aster Models |
| asympTest | Asymptotic statistic |
| asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |
| AtelieR | A GTK GUI for teaching basic concepts in statistical inference,
and doing elementary bayesian tests |
| AUCRF | Variable Selection with Random Forest and the Area Under the
Curve |
| audio | Audio Interface for R |
| audit | Bounds for Accounting Populations |
| auteur | Bayesian sampler of the trait-evolutionary process |
| automap | Automatic interpolation package |
| AutoSEARCH | General-to-Specific (GETs) Model Selection |
| aws | Adaptive Weights Smoothing |
| AWS.tools | R package to use Amazon Web Services |
| aylmer | A generalization of Fisher's exact test |
|
| B2Z | Bayesian Two-Zone Model |
| BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and
single imputation for discrete data |
| BACCO | Bayesian Analysis of Computer Code Output (BACCO) |
| backfitRichards | Backfitted independent values of Richards curves |
| backtest | Exploring portfolio-based conjectures about financial
instruments |
| BaM | Functions and datasets for books by Jeff Gill |
| BAMD | Bayesian Association Model for Genomic Data with Missing
Covariates |
| bamdit | Bayesian Meta-Analysis of diagnostic test data |
| bams | Breakpoint annotation model smoothing |
| bandit | Functions for simple A/B split test and multi-armed bandit
analysis |
| barcode | Barcode distribution plots |
| bark | Bayesian Additive Regresssion Kernels |
| Barnard | Barnard's Unconditional Test |
| BAS | Bayesian Model Averaging using Bayesian Adaptive Sampling |
| BaSAR | Bayesian Spectrum Analysis in R |
| base64 | Base 64 encoder/decoder |
| baseline | Baseline Correction of Spectra |
| basicspace | A Package to Recover a Basic Space from Issue Scales |
| BaSTA | A package for estimating age-specific survival from incomplete
capture-recapture/recovery data |
| batade | HTML reports and so on |
| batch | Batching Routines in Parallel and Passing Command-Line Arguments
to R |
| bayesclust | Tests/Searches for significant clusters in genetic data |
| bayescount | Power calculations and Bayesian analysis of count distributions
and FECRT data using MCMC |
| BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |
| bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |
| bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations |
| BayesLCA | Bayesian Latent Class Analysis |
| bayesLife | Bayesian Projection of Life Expectancy |
| BayesLogit | Logistic Regression |
| bayesm | Bayesian Inference for Marketing/Micro-econometrics |
| bayesMCClust | Mixtures-of-Experts Markov Chain Clustering and Dirichlet
Multinomial Clustering |
| bayesmix | Bayesian Mixture Models with JAGS |
| bayespack | Numerical Integration for Bayesian Inference |
| bayesPop | Probabilistic Population Projection |
| bayespref | Hierarchical Bayesian analysis of ecological count data |
| bayesQR | Bayesian quantile regression |
| BayesQTLBIC | Bayesian multi-locus QTL analysis based on the BIC criterion |
| BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |
| bayesSurv | Bayesian Survival Regression with Flexible Error and Random
Effects Distributions |
| bayesTFR | Bayesian Fertility Projection |
| BayesTree | Bayesian Methods for Tree Based Models |
| BayesValidate | BayesValidate Package |
| BayesX | R Utilities Accompanying the Software Package BayesX |
| BayesXsrc | R Package Distribution of the BayesX C++ Sources |
| BayHap | Bayesian analysis of haplotype association using Markov Chain
Monte Carlo |
| BayHaz | R Functions for Bayesian Hazard Rate Estimation |
| BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |
| BB | Solving and Optimizing Large-Scale Nonlinear Systems |
| bbemkr | Bayesian bandwidth estimation for multivariate kernel regression
with Gaussian error |
| BBmisc | Miscellaneous helper functions for B. Bischl |
| bbmle | Tools for general maximum likelihood estimation |
| BBMM | Brownian bridge movement model |
| BCA | Business and Customer Analytics |
| BCBCSF | Bias-corrected Bayesian Classification with Selected Features |
| BCE | Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data |
| BCEA | Bayesian Cost Effectiveness Analysis |
| Bchron | Bayesian chronologies via compound Poisson-Gamma processes |
| bclust | Bayesian clustering using spike-and-slab hierarchical model,
suitable for clustering high-dimensional data |
| bcool | Bringing to light significant Columns correlated with Organism
Labels |
| bcp | A Package for Performing a Bayesian Analysis of Change Point
Problems |
| bcrm | Bayesian continuous reassessment method (CRM) designs for Phase
I dose-finding trials |
| bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |
| bda | Algorithms for Birth Data Analysis |
| bdpv | Inference and design for predictive values in binary diagnostic
tests |
| bdsmatrix | Routines for Block Diagonal Symmetric matrices |
| beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |
| beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin
Plot) |
| bear | Average bioequivalence and bioavailability data analysis tool |
| beeswarm | The bee swarm plot, an alternative to stripchart |
| belief | Contains basic functions to manipulate belief functions and
associated mass assignments |
| benchden | 28 benchmark densities from Berlinet/Devroye (1994) |
| benchmark | Benchmark Experiments Toolbox |
| Benchmarking | Benchmark and frontier analysis using DEA and SFA |
| bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive
Time Series |
| ber | Batch Effects Removal |
| Bergm | Bayesian analysis for exponential random graph models |
| BerkeleyEarth | Data Input for Berkeley Earth Surface Temperature |
| Bessel | Bessel – Bessel Functions Computations and Approximations |
| bestglm | Best Subset GLM |
| betafam | Detecting rare variants for quantitative traits using nuclear
families |
| betapart | Partitioning beta diversity into turnover and nestedness
components |
| betaper | Functions to incorporate taxonomic uncertainty on multivariate
analyses of ecological data |
| betareg | Beta Regression |
| betategarch | Estimation and simulation of the first-order Beta-t-EGARCH model |
| betfairly | Access Betfair API from R |
| bethel | Bethel's algorithm |
| bfa | Bayesian Factor Analysis |
| bfast | Breaks For Additive Season and Trend (BFAST) |
| bfp | Bayesian Fractional Polynomials |
| bgmm | Gaussian Mixture Modeling algorithms. Including the belief-based
mixture modeling |
| BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |
| BHH2 | Useful Functions for Box, Hunter and Hunter II |
| BiasedUrn | Biased Urn model distributions |
| bibtex | bibtex parser |
| biclust | BiCluster Algorithms |
| bifactorial | Inferences for bi- and trifactorial trial designs |
| biganalytics | A library of utilities for big.matrix objects of package
bigmemory |
| bigdata | Big Data Analytics |
| BiGGR | Creates an interface to BiGG database, provides a framework for
simulation and produces flux graphs |
| biglars | Scalable Least-Angle Regression and Lasso |
| biglm | bounded memory linear and generalized linear models |
| bigmemory | Manage massive matrices with shared memory and memory-mapped
files |
| bigml | R bindings for the BigML API |
| biGraph | Analysis Toolbox For Bipartite Graphs |
| bigtabulate | table-, tapply-, and split-like functionality for matrix and
big.matrix objects |
| bild | bild: a package for BInary Longitudinal Data |
| bimetallic | Power for SNP analyses using silver standard cases |
| binarySimCLF | Simulates Correlated Binary Data |
| BINCO | Bootstrap Inference for Network COstruction |
| bindata | Generation of Artificial Binary Data |
| binGroup | Evaluation and experimental design for binomial group testing |
| binhf | Haar-Fisz functions for binomial data |
| binMto | Asymptotic simultaneous confidence intervals for many-to-one
comparisons of proportions |
| BinNor | Simultaneous generation of multivariate binary and normal
variates |
| binom | Binomial Confidence Intervals For Several Parameterizations |
| binomlogit | Efficient MCMC for Binomial Logit Models |
| binomTools | Performing diagnostics on binomial regression models |
| Biodem | Biodemography functions |
| BiodiversityR | GUI for biodiversity and community ecology analysis |
| Biograph | Explore life histories |
| bio.infer | Predict environmental conditions from biological observations |
| BioMark | Find biomarkers in two-class discrimination problems |
| BiomarkeR | Paired (pBI) and Unpaired Biomarker Identifier (uBI) including a
method to infer networks |
| bionetdata | Biological and chemical data networks |
| biopara | Self-contained parallel system for R |
| BioPhysConnectoR | BioPhysConnectoR |
| biOps | Image processing and analysis |
| biOpsGUI | GUI for Basic image operations |
| bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |
| BioStatR | Initiation à la Statistique avec R |
| bipartite | Visualising bipartite networks and calculating some (ecological)
indices |
| BiplotGUI | Interactive Biplots in R |
| birch | Dealing with very large datasets using BIRCH |
| bise | Auxiliary functions for phenological data analysis |
| bisectr | Tools to find bad commits with git bisect |
| biseVec | Auxiliary functions for phenological data analysis |
| bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |
| bit | A class for vectors of 1-bit booleans |
| bit64 | A S3 class for vectors of 64bit integers |
| bitops | Functions for Bitwise operations |
| bivarRIpower | Sample size calculations for bivariate longitudinal data |
| biwavelet | Conduct univariate and bivariate wavelet analyses |
| biwt | Functions to compute the biweight mean vector and covariance &
correlation matrices |
| BlakerCI | Blaker's binomial confidence limits |
| BLCOP | Black-Litterman and copula-opinion pooling frameworks |
| blender | Analyze biotic homogenization of landscapes |
| blighty | United Kingdom coastlines |
| blm | Binomial linear and linear-expit regression |
| blme | Bayesian Linear Mixed-Effects models |
| blockmodeling | An R package for Generalized and classical blockmodeling of
valued networks |
| blockrand | Randomization for block random clinical trials |
| blockTools | Block, assign, and diagnose potential interference in randomized
experiments |
| BLR | Bayesian Linear Regression |
| BMA | Bayesian Model Averaging |
| bmd | Benchmark dose analysis for dose-response data |
| bmem | Mediation analysis with missing data using bootstrap |
| Bmix | Bayesian Sampling for Stick-breaking Mixtures |
| BMN | The pseudo-likelihood method for pairwise binary markov networks |
| bmp | Read Windows Bitmap (BMP) images |
| BMS | Bayesian Model Averaging Library |
| bnlearn | Bayesian network structure learning, parameter learning and
inference |
| BNPdensity | Ferguson-Klass type algorithm for posterior normalized random
measures |
| boa | Bayesian Output Analysis Program (BOA) for MCMC |
| Bolstad | Bolstad functions |
| Bolstad2 | Bolstad functions |
| boolean | Boolean Binary Response Models |
| boolfun | Cryptographic Boolean Functions |
| BoolNet | Generation, reconstruction, simulation and analysis of
synchronous, asynchronous, and probabilistic Boolean networks |
| boot | Bootstrap Functions (originally by Angelo Canty for S) |
| BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |
| bootRes | Bootstrapped Response and Correlation Functions |
| bootruin | A bootstrap test for the probability of ruin in the classical
risk process |
| bootspecdens | Testing equality of spectral densities |
| bootStepAIC | Bootstrap stepAIC |
| bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
| Boruta | Boruta – a tool for finding significant attributes in
information systems |
| boss | Boosted One-Step Statistics: Fast and accurate approximations
for GLM, GEE and Mixed models for use in GWAS |
| BoSSA | a Bunch of Structure and Sequence Analysis |
| boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |
| bpca | Biplot of Multivariate Data Based on Principal Components
Analysis |
| BPHO | Bayesian Prediction with High-order Interactions |
| bpkde | Back Projected Kernel Density Estimation |
| bqtl | Bayesian QTL mapping toolkit |
| BradleyTerry | Bradley-Terry Models – this package is now deprecated in favour
of 'BradleyTerry2' |
| BradleyTerry2 | Bradley-Terry Models |
| BrailleR | Improved access for blind useRs |
| brainwaver | Basic wavelet analysis of multivariate time series with a
visualisation and parametrisation using graph theory |
| brew | Templating Framework for Report Generation |
| brglm | Bias reduction in binomial-response GLMs |
| Brobdingnag | Very large numbers in R |
| BRugs | R interface to the OpenBUGS MCMC software |
| BSagri | Statistical methods for safety assessment in agricultural field
trials |
| BSDA | Basic Statistics and Data Analysis |
| BsMD | Bayes Screening and Model Discrimination |
| bsml | Basis Selection from Multiple Libraries |
| bspec | Bayesian spectral inference |
| bst | Gradient Boosting |
| bstats | Basic statistical functions for R |
| BTSPAS | Bayesian Time-Strat. Population Analysis |
| bujar | Buckley-James Regression for Survival Data with High-Dimensional
Covariates |
| BurStFin | Burns Statistics Financial |
| bvls | The Stark-Parker algorithm for bounded-variable least squares |
| bvpSolve | Solvers for boundary value problems of ordinary differential
equations |
| BVS | Bayesian Variant Selection: Bayesian Model Uncertainty
Techniques for Genetic Association Studies |
| bwsurvival | Nonparametric conditional survival function for successive
survival times |
|
| c3net | Infering large-scale gene networks with C3NET |
| ca | Simple, Multiple and Joint Correspondence Analysis |
| cacher | Tools for caching and distributing statistical analyses |
| cacheSweave | Tools for caching Sweave computations |
| cacIRT | Classification accuracy and consistency under Item Response
Theory |
| CADFtest | This package performs the CADF unit root test proposed in Hansen
(1995) |
| CADStat | Provides a GUI to several statistical methods useful for causal
assessment |
| caGUI | A Tcl/Tk GUI for the functions in the ca package |
| Cairo | R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output |
| cairoDevice | Cairo-based cross-platform antialiased graphics device driver |
| CalciOMatic | Automatic Calcium Imaging Analysis |
| calibFit | Statistical models and tools for assay calibration |
| calibrate | Calibration of Scatterplot and Biplot Axes |
| calibrator | Bayesian calibration of complex computer codes |
| CALINE3 | R interface to Fortran 77 implementation of CALINE3 |
| calmate | Post-calibration of allele-specific copy-number estimates
(ASCNs) |
| candisc | Generalized Canonical Discriminant Analysis |
| canvas | R graphics device targeting the HTML canvas element |
| caper | Comparative Analyses of Phylogenetics and Evolution in R |
| capushe | Capushe, data-driven slope estimation and dimension jump |
| car | Companion to Applied Regression |
| CARBayes | Spatial areal unit modelling |
| CarbonEL | Carbon Event Loop |
| cardidates | Identification of cardinal dates in ecological time series |
| care | High-Dimensional Regression and CAR Score Variable Selection |
| CARE1 | Statistical package for population size estimation in
capture-recapture models |
| caret | Classification and Regression Training |
| caribou | Estimation of caribou abundance based on large scale
aggregations monitored by radio telemetry |
| caroline | A Collection of Database, Data Structure, Visualization, and
Utility Functions for R |
| CARramps | Reparameterized and marginalized posterior sampling for
conditional autoregressive models |
| CAscaling | CA scaling in R |
| caschrono | Séries temporelles avec R - Méthodes et cas |
| caspar | Clustered and sparse regression (CaSpaR) |
| cat | Analysis of categorical-variable datasets with missing values |
| catdata | Categorical Data |
| CatDyn | Fishery Stock Assessment by Catch Dynamic Models |
| catnet | Categorical Bayesian Network Inference |
| caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |
| catR | Procedures to generate IRT adaptive tests (CAT) |
| catspec | Special models for categorical variables |
| CausalGAM | Estimation of Causal Effects with Generalized Additive Models |
| CAVIAR | Collection of Functions for Processing, Visualizing and
Analyzing Cambial Activity and Wood Formation Monitoring Data |
| cba | Clustering for Business Analytics |
| CCA | Canonical correlation analysis |
| cccd | Class Cover Catch Digraphs |
| cccrm | CCC-RM |
| ccems | Combinatorially Complex Equilibrium Model Selection |
| ccgarch | Conditional Correlation GARCH models |
| cclust | Convex Clustering Methods and Clustering Indexes |
| CCM | Correlation classification method (CCM) |
| CCMtools | Clustering through "Correlation Clustering Model" (CCM) and
cluster analysis tools |
| CCP | Significance Tests for Canonical Correlation Analysis (CCA) |
| cda | Coupled dipole approximation |
| CDFt | Statistical downscaling through CDF-transform |
| CDM | Cognitive Diagnosis Modeling |
| CDNmoney | Components of Canadian Monetary and Credit Aggregates |
| CDVine | Statistical inference of C- and D-vine copulas |
| cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter
Optimization |
| CellularAutomaton | One-Dimensional Cellular Automata |
| cellVolumeDist | Functions to fit cell volume distributions and thereby estimate
cell growth rates and division times |
| cem | CEM: Software for Coarsened Exact Matching |
| cems | Conditional expectation manifolds |
| censReg | Censored Regression (Tobit) Models |
| CePa | Centrality-based pathway enrichment |
| cepp | Context Driven Exploratory Projection Pursuit |
| cfa | Analysis of configuration frequencies (CFA) |
| CFL | Compensatory Fuzzy Logic |
| cg | Comparison of groups |
| cgdsr | R-Based API for accessing the MSKCC Cancer Genomics Data Server
(CGDS) |
| CGene | Causal Genetic Analysis |
| cggd | Continuous Generalized Gradient Descent |
| cgh | Microarray CGH analysis using the Smith-Waterman algorithm |
| cghFLasso | Detecting hot spot on CGH array data with fused lasso
regression |
| cghseg | Segmentation methods for array CGH analysis |
| ChainLadder | Statistical methods for the calculation of outstanding claims
reserves in general insurance |
| changeLOS | Change in LOS |
| changepoint | An R package for changepoint analysis |
| charlson | Converts listwise icd9 data into comorbidity count and Charlson
Index |
| CHCN | Canadian Historical Climate Network |
| cheb | Discrete Linear Chebyshev Approximation |
| chemCal | Calibration functions for analytical chemistry |
| chemometrics | Multivariate Statistical Analysis in Chemometrics |
| ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural
Sciences and Life Sciences |
| ChemometricsWithRData | Data for package ChemometricsWithR |
| ChemoSpec | Exploratory Chemometrics for Spectroscopy |
| cherry | Multiple testing methods for exploratory research |
| CHNOSZ | Chemical Thermodynamics and Activity Diagrams |
| ChoiceModelR | Choice Modeling in R |
| choplump | Choplump tests |
| chplot | Augmented Convex Hull Plots |
| chron | Chronological objects which can handle dates and times |
| CHsharp | Choi and Hall Clustering in 3d |
| cimis | R package for retrieving data from CIMIS |
| cin | Causal Inference for Neuroscience |
| CircNNTSR | CircNNTSR: An R package for the statistical analysis of circular
data using nonnegative trigonometric sums (NNTS) models |
| CircStats | Circular Statistics, from "Topics in circular Statistics" (2001) |
| circular | Circular Statistics |
| cit | Causal Inference Test |
| CITAN | CITation ANalysis toolpack |
| citbcmst | Assigning tumor samples to CIT Breast Cancer Molecular Subtypes
from gene expression data |
| CityPlot | Visualization of structure and contents of a database |
| Ckmeans.1d.dp | Optimal distance-based clustering for one-dimensional data |
| clac | Clust Along Chromosomes, a method to call gains/losses in CGH
array data |
| class | Functions for Classification |
| classGraph | Construct Graphs of S4 Class Hierarchies |
| classifly | Explore classification models in high dimensions |
| classInt | Choose univariate class intervals |
| clhs | Conditioned Latin Hypercube Sampling |
| climatol | Some Tools for Climatology: series homogenization, plus windrose
and Walter&Lieth diagrams |
| climdex.pcic | PCIC implementation of Climdex routines |
| clime | Constrained L1-minimization for Inverse (covariance) Matrix
Estimation |
| clim.pact | Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data |
| clinfun | Clinical Trial Design and Data Analysis Functions |
| ClinicalRobustPriors | Robust Bayesian Priors in Clinical Trials: An R Package for
Practitioners |
| clinsig | Clinical significance functions |
| cloudRmpi | Cloud-based MPI Parallel Processing for R (cloudRmpi) |
| cloudRmpiJars | Third-party jars for cloudRmpi |
| cloudUtil | Cloud Util Plots |
| clpAPI | R Interface to C API of COIN-OR Clp |
| CLSOCP | A smoothing Newton method SOCP solver |
| clue | Cluster ensembles |
| clues | Clustering Method Based on Local Shrinking |
| cluster | Cluster Analysis Extended Rousseeuw et al |
| clusterCons | Calculate the consensus clustering result from re-sampled
clustering experiments with the option of using multiple
algorithms and parameter |
| clusterfly | Explore clustering interactively using R and GGobi |
| clusterGeneration | random cluster generation (with specified degree of separation) |
| clusterPower | Power calculations for cluster-randomized and cluster-randomized
crossover trials |
| clusterRepro | Reproducibility of gene expression clusters |
| clusterSim | Searching for optimal clustering procedure for a data set |
| ClustOfVar | Clustering of variables |
| clustsig | Significant Cluster Analysis |
| clustTool | GUI for clustering data with spatial information |
| clustvarsel | Variable Selection for Model-Based Clustering |
| clv | Cluster Validation Techniques |
| clValid | Validation of Clustering Results |
| cmaes | Covariance Matrix Adapting Evolutionary Strategy |
| CMC | Cronbach-Mesbah Curve |
| cmm | Categorical Marginal Models |
| cMonkey | cMonkey intgrated biclustering algorithm |
| cmprsk | Subdistribution Analysis of Competing Risks |
| cmprskContin | Continuous mark-specific relative risks for two groups |
| cmrutils | Misc Functions of the Center for the Mathematical Research |
| cncaGUI | Canonical Non-symmetrical Correspondence Analysis in R |
| CNVassoc | Association analysis of CNV data |
| coarseDataTools | A collection of functions to help with analysis of coarse
infectious disease data |
| cobs | COBS – Constrained B-splines (Sparse matrix based) |
| cobs99 | Constrained B-splines – outdated 1999 version |
| CoClust | Copula based cluster analysis |
| cocorresp | Co-correspondence analysis methods |
| coda | Output analysis and diagnostics for MCMC |
| codep | Multiscale Codependence Analysis |
| codetools | Code Analysis Tools for R |
| coefplot | Plots Coefficients from Fitted Models |
| coenoflex | Gradient-Based Coenospace Vegetation Simulator |
| coin | Conditional Inference Procedures in a Permutation Test Framework |
| colbycol | Read big text files column by column, sometimes much bigger than
available RAM, into R |
| colcor | Tests for column correlation in the presence of row correlation |
| CollocInfer | Collocation Inference for Dynamic Systems |
| coloc | Colocalisation tests of two genetic traits |
| colorout | Colorize R output on terminal emulators |
| colorRamps | Builds color tables |
| colorspace | Color Space Manipulation |
| combinat | combinatorics utilities |
| CombMSC | Combined Model Selection Criteria |
| CommonJavaJars | Useful libraries for building a Java based GUI under R |
| CommonTrend | Extract and plot common trends from a cointegration system.
Calculate P-value for Johansen Statistics |
| comorbidities | Categorizes ICD-9-CM codes based on published comorbidity
indices |
| compare | Comparing Objects for Differences |
| compareGroups | descriptives by groups |
| CompareTests | Estimate diagnostic accuracy (sensitivity, specificity, etc) and
agreement statistics when one test is conducted on only a
subsample of specimens |
| comparison | Multivariate likelihood ratio calculation and evaluation |
| compeir | Event-specific incidence rates for competing risks data |
| CompetingRiskFrailty | Competing Risk Model with Frailties for Right Censored Survival
Data |
| compHclust | Complementary Hierarchical Clustering |
| CompModSA | Sensitivity Analysis for Complex Computer Models |
| compoisson | Conway-Maxwell-Poisson Distribution |
| COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |
| compositions | Compositional Data Analysis |
| compound.Cox | Regression estimation based on the compound covariate methed
under the Cox proportional hazard model |
| Compounding | Computing Continuous Distributions |
| compOverlapCorr | Comparing overlapping correlation coefficients |
| CompQuadForm | Distribution function of quadratic forms in normal variables |
| CompRandFld | Composite-likelihood based Analysis of Random Fields |
| compute.es | Compute Effect Sizes |
| concor | Concordance |
| concord | Concordance and reliability |
| concreg | Concordance regression |
| cond | Approximate conditional inference for logistic and loglinear
models |
| condGEE | Parameter estimation in conditional GEE for recurrent event gap
times |
| condmixt | Conditional Density Estimation with Neural Network Conditional
Mixtures |
| conf.design | Construction of factorial designs |
| confReg | Confidence Estimators for Individual Regression Predictions |
| conjoint | Conjoint analysis package |
| ConjointChecks | A package to check the cancellation axioms of conjoint
measurement |
| CONOR | CONOR |
| CONORData | CONORData |
| constrainedKriging | Constrained, covariance-matching constrained and universal point
or block kriging |
| contfrac | Continued fractions |
| contrast | A collection of contrast methods |
| ConvCalendar | Converts dates between calendars |
| ConvergenceConcepts | Seeing convergence concepts in action |
| convexHaz | Nonparametric MLE/LSE of convex hazard |
| COP | Variables selection for index models via correlation pursuit |
| copas | Statistical methods to model and adjust for bias in
meta-analysis |
| copBasic | Basic Theoretical Copula, Empirical Copula, and Various Utility
Functions |
| copula | Multivariate Dependence with Copulas |
| copulaedas | Estimation of Distribution Algorithms Based on Copulas |
| corcounts | Generate correlated count random variables |
| CORElearn | CORElearn - classification, regression, feature evaluation and
ordinal evaluation |
| corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
| corpora | Statistics and data sets for corpus frequency data |
| CorrBin | Nonparametrics with clustered binary data |
| corrgram | Plot a correlogram |
| corrperm | Permutation Tests of Correlation with Repeated Measurements |
| corrplot | Visualization of a correlation matrix |
| corrsieve | CorrSieve |
| COSINE | COndition SpecIfic sub-NEtwork |
| cosso | COSSO, adaptive COSSO, variable selection for nonparametric
smoothing spline models |
| costat | Time series costationarity determination and tests of
stationarity |
| cotrend | Consistant Cotrend Rank Selection |
| COUNT | Functions, data and code for count data |
| countrycode | Create and manipulate data frames that contain country names or
country coding schemes |
| Covpath | COVPATH Package |
| covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |
| CoxBoost | Cox models by likelihood based boosting for a single survival
endpoint or competing risks |
| coxme | Mixed Effects Cox Models |
| coxphf | Cox regression with Firth's penalized likelihood |
| coxphw | Weighted Cox regression |
| coxrobust | Robust Estimation in Cox Model |
| COZIGAM | Constrained and Unconstrained Zero-Inflated Generalized Additive
Models with Model Selection Criterion |
| CPE | Concordance Probability Estimates in Survival Analysis |
| CpGassoc | Association between Methylation and a phenotype of interest |
| CPHshape | Find the maximum likelihood estimator of the shape constrained
hazard baseline and the effect parameters in the Cox
proportional hazards model |
| cplexAPI | R Interface to C API of IBM ILOG CPLEX |
| cplm | Tweedie compound Poisson linear models |
| cpm | Sequential Parametric and Nonparametric Change Detection |
| CPMCGLM | Correction of the pvalue after multiple coding |
| Cprob | Conditional probability function of a competing event |
| cramer | Multivariate nonparametric Cramer-Test for the
two-sample-problem |
| crank | Completing ranks |
| crantastic | Various R tools for http://crantastic.org/ |
| crawl | Fit continuous-time correlated random walk models to animal
movement data |
| CreditMetrics | Functions for calculating the CreditMetrics risk model |
| crimCV | Group-Based Modelling of Longitudinal Data |
| CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |
| crmn | CCMN and other noRMalizatioN methods for metabolomics data |
| crn | Downloads and Builds datasets for Climate Reference Network |
| crossdes | Design and Randomization in Crossover Studies |
| crosshybDetector | Detection of cross-hybridization events in microarray
experiments |
| crossmatch | The cross-match test |
| crp.CSFP | CreditRisk+ portfolio model |
| crrSC | Competing risks regression for Stratified and Clustered data |
| crrstep | Stepwise covariate selection for the Fine & Gray competing risks
regression model |
| crs | Categorical Regression Splines |
| CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |
| CrypticIBDcheck | Identifying cryptic relatedness in genetic association studies |
| csampling | Functions for Conditional Simulation in Regression-Scale Models |
| cshapes | CShapes Dataset and Utilities |
| cslogistic | Conditionally Specified Logistic Regression |
| csound | Accessing Csound functionality through R |
| ctarma | Estimation and simulation of CARMA(p,q) |
| cthresh | Complex Wavelet Denoising software |
| cts | Continuous Time Autoregressive Models |
| CTT | Classical Test Theory Functions |
| ctv | CRAN Task Views |
| cubature | Adaptive multivariate integration over hypercubes |
| Cubist | Rule- and Instance-Based Regression Modeling |
| cudaBayesreg | CUDA Parallel Implementation of a Bayesian Multilevel Model for
fMRI Data Analysis |
| cudaBayesregData | Data sets for the examples used in the package "cudaBayesreg" |
| CUMP | Analyze Multivariate Phenotypes by Combining Univariate results |
| cumplyr | Extends ddply to allow calculation of cumulative quantities |
| cumSeg | Change point detection in genomic sequences |
| curvclust | Curve clustering |
| curvetest | The package will formally test two curves represented by
discrete data sets to be statistically equal or not when the
errors of the two curves were assumed either equal or not using
the tube formula to calculate the tail probabilities |
| curvHDR | curvHDR filtering of flow cytometry samples |
| cusp | Cusp Catastrophe Model Fitting Using Maximum Likelihood |
| CvM2SL1Test | L1-version of Cramer-von Mises Two Sample Tests |
| CvM2SL2Test | Cramer-von Mises Two Sample Tests |
| cvplogistic | Majorization Minimization by Coordinate Descent Algorithm for
Concave Penalized Logistic Regression for High Dimensional Data |
| CVThresh | Level-Dependent Cross-Validation Thresholding |
| cvTools | Cross-validation tools for regression models |
| cwhmisc | Miscellaneous Functions for maths, plotting, printing,
statistics, strings, and tools |
| cyclones | Cyclone identification |
| cyphid | Cycle and Phase Identification for mastication data |
| cytoDiv | Cytometric diversity indices |
|
| DAAG | Data Analysis And Graphics data and functions |
| DAAGbio | Data Sets and Functions, for demonstrations with expression
arrays and gene sequences |
| DAAGxtras | Data Sets and Functions, supplementary to DAAG |
| dae | Functions useful in the design and ANOVA of experiments |
| dafs | Data analysis for forensic scientists |
| DAGGER | Consensus genetic maps |
| dagR | R functions for directed acyclic graphs |
| Daim | Diagnostic accuracy of classification models |
| DAKS | Data Analysis and Knowledge Spaces |
| DALY | DALY Calculator - A GUI for stochastic DALY calculation in R |
| DAMisc | Dave Armstrong's Miscellaneous Functions |
| DandEFA | Dandelion Plot for R-mode Exploratory Factor Analysis |
| darts | Statistical Tools to Analyze Your Darts Game |
| DatABEL | file-based access to large matrices stored on HDD in binary
format |
| dataframe | Fast data frames |
| dataframes2xls | dataframes2xls writes data frames to xls files |
| datamap | A system for mapping foreign objects to R variables and
environments |
| data.table | Extension of data.frame for fast indexing, fast ordered joins,
fast assignment, fast grouping and list columns |
| dataview | Human readable data presentation |
| date | Functions for handling dates |
| DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |
| Davies | The Davies quantile function |
| dbConnect | Provides a graphical user interface to connect with databases
that use MySQL |
| dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample
entropy |
| DBGSA | methods of distance-based gene set functional enrichment
analysis |
| DBI | R Database Interface |
| dblcens | Compute the NPMLE of distribution from doubly censored data |
| dbstats | Distance-based statistics (dbstats) |
| dcemriS4 | A Package for Medical Image Analysis (S4 implementation) |
| dcens | Doubly censoring estimation |
| DCGL | Differential Coexpression Analysis of Gene Expression Microarray
Data |
| dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |
| DCluster | Functions for the detection of spatial clusters of diseases |
| dcmle | Hierarchical Models Made Easy with Data Cloning |
| dcv | Conventional Cross-validation statistics for climate-growth
model |
| DDD | Diversity-dependent diversification |
| ddepn | Dynamic Deterministic Effects Propagation Networks: Infer
signalling networks for timecourse RPPA data |
| ddesolve | Solver for Delay Differential Equations |
| DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays) |
| ddst | Data driven smooth test |
| deal | Learning Bayesian Networks with Mixed Variables |
| debug | MVB's debugger for R |
| DECIDE | DEComposition of Indirect and Direct Effects |
| decon | Deconvolution Estimation in Measurement Error Models |
| Deducer | Deducer |
| DeducerExtras | Additional dialogs and functions for Deducer |
| DeducerMMR | A Deducer plugin for moderated multiple regressions and simple
slopes analysis |
| DeducerPlugInExample | Deducer Plug-in Example |
| DeducerPlugInScaling | Reliability and factor analysis plugin |
| DeducerSpatial | Deducer for spatial data analysis |
| deducorrect | Deductive correction of simple rounding, typing and sign errors |
| Defaults | Create Global Function Defaults |
| degenes | Detection of differentially expressed genes |
| degreenet | Models for Skewed Count Distributions Relevant to Networks |
| deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |
| delftfews | delftfews R extensions |
| delt | Estimation of multivariate densities with adaptive histograms |
| DEMEtics | Evaluating the genetic differentiation between populations based
on Gst and D values |
| demography | Forecasting mortality, fertility, migration and population data |
| denpro | Visualization of multivariate, functions, sets, and data |
| denstrip | Density strips and other methods for compactly illustrating
distributions |
| DEoptim | Global optimization by Differential Evolution |
| Depela | Depela |
| depend.truncation | Inference for parametric and semiparametric models based on
dependent truncation data |
| depmix | Dependent Mixture Models |
| depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4 |
| depth | Depth functions tools for multivariate analysis |
| depthTools | Depth Tools Package |
| descr | Descriptive statistics |
| DescribeDisplay | R interface to DescribeDisplay (GGobi plugin) |
| deseasonalize | Optimal deseasonalization for geophysical time series using AR
fitting |
| DesignPatterns | Design Patterns in R to build reusable object-oriented software |
| desirability | Desirabiliy Function Optimization and Ranking |
| desire | Desirability functions |
| deSolve | General solvers for initial value problems of ordinary
differential equations (ODE), partial differential equations
(PDE), differential algebraic equations (DAE), and delay
differential equations (DDE) |
| detect | Analyzing Wildlife Data with Detection Error |
| deTestSet | Testset for differential equations |
| detrendeR | Start the detrendeR Graphical User Interface (GUI) |
| DetSel | A computer program to detect markers responding to selection |
| devEMF | EMF graphics output device |
| Devore5 | Data sets from Devore's "Prob and Stat for Eng (5th ed)" |
| Devore6 | Data sets from Devore's "Prob and Stat for Eng (6th ed)" |
| Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |
| devtools | Tools to make developing R code easier |
| dfcrm | Dose-finding by the continual reassessment method |
| dfoptim | Derivative-free Optimization |
| dglm | Double generalized linear models |
| dgmb | dgmb Simulating data for PLS structural models |
| dgof | Discrete Goodness-of-Fit Tests |
| dhglm | Double Hierarchical Generalized Linear Models |
| diagram | Functions for visualising simple graphs (networks), plotting
flow diagrams |
| DiagTest3Grp | Diagnostic test summary measures for three ordinal groups |
| diamonds | Analysis and sampling grids from diamond partitions |
| dice | Calculate probabilities of various dice-rolling events |
| DiceDesign | Designs of Computer Experiments |
| DiceEval | Construction and evaluation of metamodels |
| DiceKriging | Kriging methods for computer experiments |
| DiceOptim | Kriging-based optimization for computer experiments |
| DiceView | Plot methods for computer experiments design and surrogate |
| dichromat | Color schemes for dichromats |
| dicionariosIBGE | Dictionaries for reading survey microdata from IBGE |
| dielectric | Defines some physical constants and dielectric functions
commonly used in optics, plasmonics |
| DierckxSpline | R companion to "Curve and Surface Fitting with Splines" |
| diff | Statistics: What's the Difference? |
| diffEq | Functions from the book Solving Differential Equations in R |
| diffractometry | Baseline identification and peak decomposition for x-ray
diffractograms |
| diffusionMap | Diffusion map |
| difR | Collection of methods to detect dichotomous differential item
functioning (DIF) in psychometrics |
| digeR | GUI tool for analyzing 2D DIGE data |
| digest | Create cryptographic hash digests of R objects |
| digitize | digitize : a plot digitizer in R |
| DIME | DIME (Differential Identification using Mixture Ensemble) |
| dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number
Aberrations in Tumors |
| diptest | Hartigan's dip test statistic for unimodality - corrected code |
| DIRECT | Bayesian Clustering of Multivariate Data Under the
Dirichlet-Process Prior |
| directlabels | Direct labels for multicolor plots in lattice or ggplot2 |
| DirichletReg | Dirichlet Regression in R |
| dirmult | Estimation in Dirichlet-Multinomial distribution |
| disclap | Discrete Laplace Family |
| disclapmix | Discrete Laplace mixture inference using the EM algorithm |
| DiscreteLaplace | Discrete Laplace distribution |
| discreteMTP | Multiple testing procedures for discrete test statistics |
| discretization | Data preprocessing, discretization for classification |
| diseasemapping | Calculate observed and expected disease incidence counts from a
case file and population data |
| dismo | Species distribution modeling |
| dispmod | Dispersion models |
| Distance | A simple way to fit detection functions to distance sampling
data and calculate abundance/density for biological
populations |
| distory | Distance Between Phylogenetic Histories |
| distr | Object oriented implementation of distributions |
| distrDoc | Documentation for packages distr, distrEx, distrSim, distrTEst,
distrTeach, distrMod, and distrEllipse |
| distrEllipse | S4 classes for elliptically contoured distributions |
| distrEx | Extensions of package distr |
| DistributionUtils | Distribution Utilities |
| distrMod | Object oriented implementation of probability models |
| distrSim | Simulation classes based on package distr |
| distrTeach | Extensions of package distr for teaching Stochastics/Statistics
in secondary school |
| distrTEst | Estimation and Testing classes based on package distr |
| divagis | Provides tools for quality checks of georeferenced plant species
accessions |
| diveMove | Dive analysis and calibration |
| diversitree | diversitree: comparative phylogenetic analyses of
diversification |
| DiversitySampler | Functions for re-sampling a community matrix to compute
diversity indices at different sampling levels |
| divisors | Find the divisors of a number |
| dixon | Nearest Neighbour Contingency Table Analysis |
| dkDNA | Diffusion kernels on a set of genotypes |
| dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |
| dlmap | Detection Localization Mapping for QTL |
| dlmodeler | Generalized Dynamic Linear Modeler |
| dlnm | Distributed Lag Non-linear Models |
| dma | Dynamic model averaging |
| dmt | Dependency Modeling Toolkit |
| DMwR | Functions and data for "Data Mining with R" |
| DNAtools | Tools for analysing forensic genetic DNA data |
| DOBAD | Analysis of Discretely Observed linear
Birth-And-Death(-and-immigration) Markov Chains |
| doBy | doBy - Groupwise summary statistics, general linear contrasts,
population means (least-squares-means), and other utilities |
| Dodge | Functions for Acceptance Sampling Ideas originated by H.F. Dodge |
| DoE.base | Full factorials, orthogonal arrays and base utilities for DoE
packages |
| DoE.wrapper | Wrapper package for design of experiments functionality |
| doMC | Foreach parallel adaptor for the multicore package |
| doMPI | Foreach parallel adaptor for the Rmpi package |
| doParallel | Foreach parallel adaptor for the parallel package |
| doRedis | Foreach parallel adapter for the rredis package |
| doRNG | Generic Reproducible Parallel Backend for foreach Loops |
| DoseFinding | Planning and Analyzing Dose Finding experiments |
| DOSim | Disease Analysis toolkit for gene set; Computation of
similarities between DO terms and disease similarity between
gene products; Module detection among the gene set and
multilayer annotation for each module |
| doSNOW | Foreach parallel adaptor for the snow package |
| dostats | Compute statistics helper functions |
| dpa | Dynamic Path Approach |
| dplR | Dendrochronology Program Library in R |
| DPM.GGM | Dirichlet Process Mixtures (DPM) and related models using
Gaussian Graphical Models (GGM) for Sparse covariance
estimation in heterogeneous samples |
| dpmixsim | Dirichlet Process Mixture model simulation for clustering and
image segmentation |
| DPpackage | Bayesian nonparametric modeling in R |
| dr | Methods for dimension reduction for regression |
| drawExpression | Visualising R syntax through graphics |
| drc | Analysis of dose-response curves |
| drfit | Dose-response data evaluation |
| DRI | DR-Integrator |
| drm | Regression and association models for repeated categorical data |
| dse | Dynamic Systems Estimation (time series package) |
| dse1 | DSE (unbundled transition package) |
| dse2 | DSE (unbundled transition package) |
| DSL | Distributed Storage and List |
| DSpat | Spatial modelling for distance sampling data |
| DTDA | Doubly truncated data analysis |
| dti | Analysis of diffusion weighted imaging (DWI) data |
| DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted
for Unequal Variances and Unequal Sample Sizes |
| dtt | Discrete Trigonometric Transforms |
| dtw | Dynamic Time Warping algorithms |
| dvfBm | Discrete variations of a fractional Brownian motion |
| DWD | DWD implementation based on A IPM SOCP solver |
| dyad | Analysis of dyadic observational data |
| dyn | Time Series Regression |
| dynamicGraph | dynamicGraph |
| dynamicTreeCut | Methods for detection of clusters in hierarchical clustering
dendrograms |
| dynamo | Dynamic Models |
| dynaTree | Dynamic trees for learning and design |
| dynCorr | Dynamic Correlation Package |
| dynGraph | Interactive visualization of dataframes and factorial planes |
| dynlm | Dynamic Linear Regression |
| dynpred | Companion package to "Dynamic Prediction in Clinical Survival
Analysis" |
| dynsurv | Dynamic models for survival data |
|
| e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |
| eaf | Plots of the Empirical Attainment Function |
| earth | Multivariate Adaptive Regression Spline Models |
| eba | Elimination-by-Aspects (EBA) Models |
| ebal | Entropy reweighting to create balanced samples |
| EbayesThresh | Empirical Bayes Thresholding and Related Methods |
| ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |
| Ecdat | Data sets for econometrics |
| ecespa | Functions for spatial point pattern analysis |
| eco | R Package for Ecological Inference in 2x2 Tables |
| ecodist | Dissimilarity-based functions for ecological analysis |
| EcoHydRology | A community modeling foundation for Eco-Hydrology |
| ecolMod | "A practical guide to ecological modelling - using R as a
simulation platform" |
| ecoreg | Ecological regression using aggregate and individual data |
| EcoTroph | EcoTroph modelling support |
| edcc | Economic Design of Control Charts |
| edci | Edge Detection and Clustering in Images |
| edesign | Maximum entropy sampling |
| editrules | R package for parsing and manipulating edit rules |
| EDR | Estimation of the effective dimension reduction (EDR) space |
| edrGraphicalTools | Provide tools for dimension reduction methods |
| effects | Effect Displays for Linear, Generalized Linear,
Multinomial-Logit, Proportional-Odds Logit Models and
Mixed-Effects Models |
| EffectStars | Visualization of Categorical Response Models |
| egonet | Tool for ego-centric measures in Social Network Analysis |
| eha | Event History Analysis |
| eigendog | EigenDog |
| eigeninv | Generates (dense) matrices that have a given set of eigenvalues |
| eigenmodel | Semiparametric factor and regression models for symmetric
relational data |
| eiPack | eiPack: Ecological Inference and Higher-Dimension Data
Management |
| EL | Two-sample Empirical Likelihood |
| elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |
| el.convex | empirical likelihood ratio tests for means |
| elec | Collection of functions for statistical election audits |
| elec.strat | Functions for election audits using stratified random samples |
| ElectroGraph | Enhanced routines for plotting and analyzing valued relational
data |
| ElemStatLearn | Data sets, functions and examples from the book: "The Elements
of Statistical Learning, Data Mining, Inference, and
Prediction" by Trevor Hastie, Robert Tibshirani and Jerome
Friedman |
| ellipse | Functions for drawing ellipses and ellipse-like confidence
regions |
| elliptic | elliptic functions |
| elrm | Exact Logistic Regression via MCMC |
| EMA | Easy Microarray data Analysis |
| EMC | Evolutionary Monte Carlo (EMC) algorithm |
| EMCC | Evolutionary Monte Carlo (EMC) methods for clustering |
| EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |
| emdbook | Ecological models and data (book support) |
| emdist | Earth Mover's Distance |
| emg | Exponentially Modified Gaussian (EMG) Distribution |
| EMJumpDiffusion | EM-Algorithm for Jump Diffusion processes |
| emma | Evolutionary model-based multiresponse approach |
| emme2 | Read and Write to an EMME/2 databank |
| emoa | Evolutionary Multiobjective Optimization Algorithms |
| emplik | Empirical likelihood ratio for censored/truncated data |
| emplik2 | Empirical-likelihood test (two-sample, censored data) |
| EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete
Multivariate data |
| emu | Interface to the Emu Speech Database System |
| emulator | Bayesian emulation of computer programs |
| endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous
Selection |
| endorse | R Package for Analyzing Endorsement Experiments |
| energy | E-statistics (energy statistics) |
| english | Translate integers into English |
| EngrExpt | Data sets from "Introductory Statistics for Engineering
Experimentation" |
| ENmisc | Neuwirth miscellaenous |
| EnQuireR | A package dedicated to questionnaires |
| enrichvs | Enrichment assessment of virtual screening approaches |
| ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging |
| entropy | Entropy and Mutual Information Estimation |
| envelope | Envelope normality test |
| epade | Easy Plots |
| Epi | A package for statistical analysis in epidemiology |
| epibasix | Elementary Epidemiological Functions for a Graduate
Epidemiology\Biostatistics Course |
| epicalc | Epidemiological calculator |
| epinet | A collection of epidemic/network-related tools |
| epiR | An R package for the analysis of epidemiological data |
| epitools | Epidemiology Tools |
| epoc | EPoC (Endogenous Perturbation analysis of Cancer) |
| epsi | Edge Preserving Smoothing for Images |
| EQL | Extended-Quasi-Likelihood-Function (EQL) |
| eqtl | Tools for analyzing eQTL experiments: A complementary to Karl
Broman's 'qtl' package for genome-wide analysis |
| equate | Statistical Methods for Test Score Equating |
| EquiNorm | Normalize expression data using equivalently expressed genes |
| equivalence | Provides tests and graphics for assessing tests of equivalence |
| erer | Empirical Research in Economics with R |
| ergm | Fit, Simulate and Diagnose Exponential-Family Models for
Networks |
| ergm.userterms | User-specified terms for the statnet suite of packages |
| eRm | Extended Rasch Modeling |
| esd4all | esd4all |
| esotericR | esotericR articles from lemnica.com |
| ESPRESSO | Power Analysis and Sample Size Calculation |
| EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |
| estout | Estimates Output |
| EstSimPDMP | Estimation of the jump rate and simulation for
piecewise-deterministic Markov processes |
| etable | Easy Table |
| ETC | Equivalence to control |
| ETLUtils | Utility functions to execute standard ETL operations (using
package ff) on large data |
| etm | Empirical Transition Matrix |
| EuclideanMaps | Displays Euclidean Maps |
| EvalEst | Dynamic Systems Estimation - extensions |
| evaluate | Parsing and evaluation tools that provide more details than the
default |
| evd | Functions for extreme value distributions |
| evdbayes | Bayesian Analysis in Extreme Value Theory |
| eVenn | eVenn: A powerful tool to compare lists and draw Venn diagrams |
| events | Store and manipulate event data |
| EVER | Estimation of Variance by Efficient Replication |
| evir | Extreme Values in R |
| evora | Epigenetic Variable Outliers for Risk prediction Analysis |
| evtree | Evolutionary Learning of Globally Optimal Trees |
| Exact | Exact Unconditional Tests for 2x2 Tables |
| exact2x2 | Exact Conditional Tests and Confidence Intervals for 2x2 tables |
| exactci | Exact P-values and Matching Confidence Intervals for simple
Discrete Parametric Cases |
| exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |
| exactmaxsel | Maximally selected statistics for binary response variables -
Exact methods |
| exactRankTests | Exact Distributions for Rank and Permutation Tests |
| exams | Automatic Generation of Standardized Exams for Large-Lecture
Courses |
| excel.link | Convenient way to work with data in Microsoft Excel |
| ExomeCNV | Detect CNV and LOH from Exome Sequecing Data |
| ExomeDepth | Calls CNV from exome sequence data |
| ExPD2D | Exact Computation of Bivariate Projection Depth Based on Fortran
Code |
| ExpDes | Experimental Designs package |
| expectreg | Expectile and Quantile Regression |
| experiment | experiment: R package for designing and analyzing randomized
experiments |
| expert | Modeling without data using expert opinion |
| expm | Matrix exponential |
| expsmooth | Data sets from "Forecasting with exponential smoothing" |
| exptest | Tests for Exponentiality |
| extfunnel | Additional Funnel Plot Augmentations |
| extraBinomial | Extra-binomial approach for pooled sequencing data |
| extracat | Graphic Extensions for Categorical Data |
| extRemes | Extreme value toolkit |
| extremevalues | Univariate outlier detection |
| eyetracking | Eyetracking Helper Functions |
| ez | Easy analysis and visualization of factorial experiments |
| ezsim | provide an easy to use framework to conduct simulation |
|
| FacPad | Bayesian Sparse Factor Analysis model for the inference of
pathways responsive to drug treatment |
| FactMixtAnalysis | Factor Mixture Analysis with covariates |
| FactoClass | Combination of Factorial Methods and Cluster Analysis |
| FactoMineR | Multivariate Exploratory Data Analysis and Data Mining with R |
| factorQR | Bayesian quantile regression factor models |
| factualR | thin wrapper for the Factual.com server API |
| FAdist | Distributions that are sometimes used in hydrology |
| Fahrmeir | Data from the book "Multivariate Statistical Modelling Based on
Generalized Linear Models", first edition, by Ludwig Fahrmeir
and Gerhard Tutz |
| FAiR | Factor Analysis in R |
| fairselect | Feature Annealed Independence Rules (demo) |
| faisalconjoint | Faisal Conjoint Model: A New Approach to Conjoint Analysis |
| fame | Interface for FAME time series database |
| Familias | Probabilities for Pedigrees given DNA data |
| FAmle | Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions |
| FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests
under dependence in high-dimensional data |
| fanc | Penalized likelihood factor analysis via non-concave penalty |
| fANCOVA | Nonparametric Analysis of Covariance |
| fanovaGraph | Building Kriging models from FANOVA graphs |
| faoutlier | Influential case detection methods for factor analysis and SEM |
| far | Modelization for Functional AutoRegressive processes |
| faraway | Functions and datasets for books by Julian Faraway |
| fArma | ARMA Time Series Modelling |
| farmR | Mixed Integer model of Arable Farms |
| fAsianOptions | EBM and Asian Option Valuation |
| fAssets | Rmetrics - Assets Selection and Modelling |
| fast | Implementation of the Fourier Amplitute Sensitivity Test (FAST) |
| fastcluster | Fast hierarchical clustering routines for R and Python |
| fastcox | Lasso and elastic-net penalized Cox's regression in high
dimensions models using the cocktail algorithm |
| fastGHQuad | Fast Rcpp implementation of Gauss-Hermite quadrature |
| fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |
| FastImputation | Learn from training data then quickly fill in missing data |
| fastmatch | Fast match() function |
| fastR | Data sets and utilities for Foundations and Applications of
Statistics by R Pruim |
| FastRWeb | Fast Interactive Framework for Web Scripting Using R |
| fastVAR | fastVAR |
| favir | Formatted Actuarial Vignettes in R |
| FAwR | Functions and Datasets for "Forest Analytics with R" |
| fBasics | Rmetrics - Markets and Basic Statistics |
| fbati | Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families |
| FBN | FISH Based Normalization and Copy Number inference of SNP
microarray data |
| fBonds | Bonds and Interest Rate Models |
| fCertificates | fCertificates - Basics of Certificates and Structured Products
Valuation |
| fCopulae | Rmetrics - Dependence Structures with Copulas |
| FD | Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology |
| fda | Functional Data Analysis |
| fdaMixed | Functional data analysis in a mixed model framework |
| fda.usc | Functional Data Analysis and Utilities for Statistical Computing
(fda.usc) |
| fdim | Functions for calculating fractal dimension |
| fdrci | Permutation-based FDR Point and Confidence Interval Estimation |
| fdrtool | Estimation and Control of (Local) False Discovery Rates |
| fds | Functional data sets |
| fdth | Frequency Distribution Tables, Histograms and Poligons |
| FeaLect | Scores features for Feature seLection |
| feature | Feature significance for multivariate kernel density estimation |
| features | Feature Extraction for Discretely-Sampled Functional Data |
| fechner | Fechnerian Scaling of Discrete Object Sets |
| fEcofin | Economic and Financial Data Sets |
| fExoticOptions | Exotic Option Valuation |
| fExtremes | Rmetrics - Extreme Financial Market Data |
| ff | memory-efficient storage of large data on disk and fast access
functions |
| ffbase | Basic statistical functions for package ff |
| FFD | Freedom From Disease |
| ffmanova | Fifty-fifty MANOVA |
| fftw | Fast FFT and DCT based on FFTW |
| fgac | Generalized Archimedean Copula |
| fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
| FGN | Fractional Gaussian Noise, estimation and simulaton |
| fgui | Function GUI |
| FIAR | Functional Integration Analysis in R |
| fields | Tools for spatial data |
| FieldSim | Random fields simulations |
| filehash | Simple key-value database |
| filehashSQLite | Simple key-value database using SQLite |
| filterviewR | Get started easily with FilterView from R |
| fImport | Rmetrics - Economic and Financial Data Import |
| financial | Solving financial problems in R |
| FinAsym | Classifies implicit trading activity from market quotes and
computes the probability of informed trading |
| finebalance | Approximate fine balance when exact fine balance is not
achievable |
| fingerprint | Functions to operate on binary fingerprint data |
| FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |
| FisherEM | Model-Based Clustering in the Fisher Discriminative Subspace |
| fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization
Tools in R |
| fishmethods | Fisheries Methods and Models in R |
| fishmove | Prediction of Fish Movement Parameters |
| fit4NM | NONMEM platform |
| FitAR | Subset AR Model Fitting |
| FitARMA | FitARMA: Fit ARMA or ARIMA using fast MLE algorithm |
| fitdistrplus | Help to fit of a parametric distribution to non-censored or
censored data |
| fitDRC | Fitting Density Ratio Classes |
| FITSio | FITS (Flexible Image Transport System) utilities |
| FKF | Fast Kalman Filter |
| flashClust | Implementation of optimal hierarchical clustering |
| flexclust | Flexible Cluster Algorithms |
| flexmix | Flexible Mixture Modeling |
| FlexParamCurve | Tools to Fit Flexible Parametric Curves |
| flexsurv | Flexible parametric survival models |
| flip | Multivariate Permutation Tests |
| FLLat | Fused Lasso Latent Feature Model |
| flsa | Path algorithm for the general Fused Lasso Signal Approximator |
| flubase | Baseline of mortality free of influenza epidemics |
| Flury | Data Sets from Flury, 1997 |
| flux | Flux rate calculation from dynamic closed chamber measurements |
| fma | Data sets from "Forecasting: methods and applications" by
Makridakis, Wheelwright & Hyndman (1998) |
| FME | A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability, Monte Carlo Analysis |
| fmri | Analysis of fMRI experiments |
| fmsb | Functions for medical statistics book with some demographic data |
| fMultivar | Multivariate Market Analysis |
| FNN | Fast Nearest Neighbor Search Algorithms and Applications |
| fNonlinear | Nonlinear and Chaotic Time Series Modelling |
| foba | greedy variable selection |
| fOptions | Basics of Option Valuation |
| forams | Foraminifera and Community Ecology Analyses |
| foreach | Foreach looping construct for R |
| ForeCA | ForeCA - Forecastable Component Analysis |
| forecast | Forecasting functions for time series and linear models |
| foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
.. |
| forensic | Statistical Methods in Forensic Genetics |
| forensim | Statistical tools for the interpretation of forensic DNA
mixtures |
| ForImp | Imputation of missing values through a forward imputation
algorithm |
| fork | R functions for handling multiple processes |
| formatR | Format R Code Automatically |
| Formula | Extended Model Formulas |
| fortunes | R Fortunes |
| forward | Forward search |
| fossil | Palaeoecological and Palaeogeographical Analysis Tools |
| FourierDescriptors | Generate images using Fourier descriptors |
| FourScores | FourScores - A game for two players |
| fpc | Flexible procedures for clustering |
| fpca | Restricted MLE for Functional Principal Components Analysis |
| fPortfolio | Rmetrics - Portfolio Selection and Optimization - ebook
available at www.rmetrics.org |
| fpow | Computing the noncentrality parameter of the noncentral F
distribution |
| fpp | Data for "Forecasting: principles and practice" |
| fptdApprox | Approximation of first-passage-time densities for diffusion
processes |
| fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |
| fracprolif | Fraction Proliferation via a quiescent growth model |
| fractal | Fractal Time Series Modeling and Analysis |
| fractaldim | Estimation of fractal dimensions |
| fractalrock | Generate fractal time series with non-normal returns
distribution |
| frailtyHL | Frailty Models via H-likelihood |
| frailtypack | General Frailty models using a semi_parametrical penalized
likelihood estimation or a parametrical estimation |
| FRB | Fast and Robust Bootstrap |
| FRBData | Download interest rate data from FRB's website |
| frbf | Implementation of the "Flexible kernels for RBF network"
algorithm |
| fRegression | Regression Based Decision and Prediction |
| freqMAP | Frequency Moving Average Plots (MAP) of Multinomial Data by a
Continuous Covariate |
| FrF2 | Fractional Factorial designs with 2-level factors |
| FrF2.catlg128 | Complete catalogues of resolution IV 128 run 2-level fractional
factorials up to 24 factors |
| frmqa | Financial Risk Management and Quantitative Analysis |
| frontier | Stochastic Frontier Analysis |
| frt | Full Randomization Test |
| FSelector | Selecting attributes |
| FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance
Mass Spectrometry Data |
| ftnonpar | Features and Strings for Nonparametric Regression |
| fTrading | Technical Trading Analysis |
| fts | R interface to tslib (a time series library in c++) |
| ftsa | Functional time series analysis |
| fume | FUME package |
| fun | Use R for Fun |
| FunCluster | Functional Profiling of Microarray Expression Data |
| FuncMap | Hive Plots of R Package Function Calls |
| functional | Curry, Compose, and other higher-order functions |
| fUnitRoots | Trends and Unit Roots |
| FunNet | Integrative Functional Analysis of Transcriptional Networks |
| futile | Futile base package |
| futile.any | Futile library to provide some polymorphism |
| futile.logger | Futile logger subsystem |
| futile.matrix | Futile matrix utilities |
| futile.options | Futile options management |
| futile.paradigm | A framework for working in a functional programming paradigm in
R |
| fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |
| fuzzyOP | Fuzzy numbers and the main mathematical operations |
| fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |
| fwdmsa | Forward search for Mokken scale analysis |
| fwsim | Fisher-Wright Population Simulation |
| fxregime | Exchange Rate Regime Analysis |
|
| G1DBN | A package performing Dynamic Bayesian Network inference |
| G2Sd | Grain-size Statistics and Description of Sediment |
| GA4Stratification | A genetic algorithm approach to determine stratum boundaries and
sample sizes of each stratum in stratified sampling |
| GAD | GAD: Analysis of variance from general principles |
| gafit | Genetic Algorithm for Curve Fitting |
| galts | Genetic algorithms and C-steps based LTS (Least Trimmed Squares)
estimation |
| gam | Generalized Additive Models |
| gamair | Data for "GAMs: An Introduction with R" |
| GAMBoost | Generalized linear and additive models by likelihood based
boosting |
| gamboostLSS | Boosting Methods for GAMLSS Models |
| GAMens | Applies GAMbag, GAMrsm and GAMens ensemble classifiers for
binary classification |
| games | Statistical Estimation of Game-Theoretic Models |
| gamesNws | Playing games using a NWS Server |
| gamlss | Generalized Additive Models for Location Scale and Shape |
| gamlss.add | GAMLSS Additive |
| gamlss.cens | Fitting an interval response variable using gamlss.family
distributions |
| gamlss.data | GAMLSS Data |
| gamlss.demo | Demos for GAMLSS |
| gamlss.dist | Distributions to be used for GAMLSS modelling |
| gamlss.mx | A GAMLSS add on package for fitting mixture distributions |
| gamlss.nl | Fitting non linear parametric GAMLSS models |
| gamlss.tr | Generating and fitting truncated (gamlss.family) distributions |
| gamlss.util | GAMLSS Utilities |
| gamm4 | Generalized additive mixed models using mgcv and lme4 |
| gammSlice | Generalized additive mixed model analysis via slice sampling |
| GANPA | Gene Association Network-based Pathway Analysis |
| GANPAdata | The GANPA Datasets Package |
| gap | Genetic analysis package |
| gaussDiff | Difference measures for multivariate Gaussian probability
density functions |
| gaussquad | Collection of functions for Gaussian quadrature |
| gb | Generalize Lambda Distribution and Generalized Bootstrapping |
| GB2 | Generalized Beta Distribution of the Second Kind: properties,
likelihood, estimation |
| gbev | Gradient Boosted Regression Trees with Errors-in-Variables |
| gbm | Generalized Boosted Regression Models |
| gbRd | Utilities for processing Rd objects and files |
| gbs | Package for Generalized Birnbaum-Saunders Distributions |
| gcbd | GPU/CPU Benchmarking in Debian-based systems |
| gcdnet | A generalized coordinate descent (GCD) algorithm for computing
the solution path of the hybrid Huberized support vector
machine (HHSVM) and its generalization |
| gcExplorer | Graphical Cluster Explorer |
| gclus | Clustering Graphics |
| gcmr | Gaussian Copula Marginal Regression |
| gcmrec | General class of models for recurrent event data |
| gcolor | Provides an Inequation Algorithm Function and a solution to
import DIMACS files |
| gdata | Various R programming tools for data manipulation |
| g.data | Delayed-Data Packages |
| GDD | GD device for creating bitmap graphics as jpeg, png or gif files
using gd library |
| gdsfmt | CoreArray Genomic Data Structure (GDS) R Interface |
| gee | Generalized Estimation Equation solver |
| geepack | Generalized Estimating Equation Package |
| geiger | Analysis of evolutionary diversification |
| GenABEL | genome-wide SNP association analysis |
| genalg | R Based Genetic Algorithm |
| geneARMA | Simulate, model, and display data from a time-course microarray
experiment with periodic gene expression |
| Geneclust | Simulation and analysis of spatial structure of population
genetics data |
| GeneCycle | Identification of Periodically Expressed Genes |
| GeneF | Package for Generalized F-statistics |
| Geneland | Detection of structure from multilocus genetic data |
| geneListPie | Profiling a gene list into GOslim or KEGG function pie |
| GeneNet | Modeling and Inferring Gene Networks |
| genepi | Genetic Epidemiology Design and Inference |
| GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |
| GeneReg | Construct time delay gene regulatory network |
| genetics | Population Genetics |
| GenKern | Functions for generating and manipulating binned kernel density
estimates |
| genomatic | Manages microsatellite projects. Creates 96-well maps,
genotyping submission forms, rerun management, and import into
statistical software |
| genoPlotR | Plot publication-grade gene and genome maps |
| GenOrd | Simulation of ordinal and discrete variables with given
correlation matrix and marginal distributions |
| genridge | Generalized ridge trace plots for ridge regression |
| GenSA | R functions for Generalized Simulated Annealing |
| GEOmap | Topographic and Geologic Mapping |
| geomapdata | Data for topographic and Geologic Mapping |
| geometry | Mesh generation and surface tesselation |
| geonames | Interface to www.geonames.org web service |
| geophys | Geophysics, Continuum Mechanics, Mogi Model |
| geoR | Analysis of geostatistical data |
| geoRglm | geoRglm - a package for generalised linear spatial models |
| geosphere | Spherical Trigonometry |
| geospt | Spatial geostatistics; some geostatistical and radial basis
functions, prediction and cross validation; design of optimal
spatial sampling networks based on geostatistical modelling |
| geotools | Geo tools |
| GeoXp | Interactive exploratory spatial data analysis |
| geozoo | Zoo of Geometric Objects |
| getopt | C-like getopt behavior |
| GEVcdn | GEV conditonal density estimation network |
| GExMap | A visual, intuitive, easy to use software giving access to a new
type of information buried into your microarray data |
| GGally | Extension to ggplot2 |
| ggdendro | Tools for extracting dendrogram and tree diagram plot data for
use with ggplot |
| GGEBiplotGUI | GGEBiplotGUI: Interactive GGE Biplots in R |
| gglasso | Group Lasso Penalized Learning Using A Unified BMD Algorithm |
| ggm | A package for Graphical Markov Models |
| ggmap | A package for spatial visualization with Google Maps and
OpenStreetMap |
| GGMselect | Gaussian Graphs Models selection |
| ggplot2 | An implementation of the Grammar of Graphics |
| GhcnDaily | Downloads and processes GHCN daily |
| ghyp | A package on the generalized hyperbolic distribution and its
special cases |
| gibbs.met | Naive Gibbs Sampling with Metropolis Steps |
| GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |
| giRaph | The giRaph package for graph representation in R |
| glasso | Graphical lasso- estimation of Gaussian graphical models |
| gld | Estimation and use of the generalised (Tukey) lambda
distribution |
| GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods |
| gldist | An Asymmetry-Steepness Parameterization of the Generalized
Lambda Distribution |
| glm2 | Fitting Generalized Linear Models |
| glmc | Fitting Generalized Linear Models Subject to Constraints |
| glmdm | R Code for Simulation of GLMDM |
| glmmAK | Generalized Linear Mixed Models |
| glmmBUGS | Generalised Linear Mixed Models and Spatial Models with WinBUGS,
BRugs, or OpenBUGS |
| glmmGS | Gauss-Seidel Generalized Linear Mixed Model solver |
| glmmLasso | Variable selection for generalized linear mixed models by
L1-penalized estimation |
| glmmML | Generalized linear models with clustering |
| glmnet | Lasso and elastic-net regularized generalized linear models |
| glmnetcr | Fit a penalized constrained continuation ratio model for
predicting an ordinal response |
| glmpath | L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model |
| glmpathcr | Fit a penalized continuation ratio model for predicting an
ordinal response |
| glmperm | Inference in Generalized Linear Models |
| glmulti | Model selection and multimodel inference made easy |
| globalboosttest | Testing the additional predictive value of high-dimensional data |
| glogis | Fitting and Testing Generalized Logistic Distributions |
| glpkAPI | R Interface to C API of GLPK |
| glrt | Generalized Logrank Tests for Interval-censored Failure Time
Data |
| gMCP | Graph Based Multiple Comparison Procedures |
| GMD | Generalized Minimum Distance of distributions |
| gmm | Generalized Method of Moments and Generalized Empirical
Likelihood |
| GMMBoost | Likelihood-based Boosting for Generalized mixed models |
| gmodels | Various R programming tools for model fitting |
| gmp | Multiple Precision Arithmetic |
| gmt | Interface between GMT Map-Making Software and R |
| gnm | Generalized Nonlinear Models |
| gnumeric | Read data from files readable by gnumeric |
| goalprog | Weighted and lexicographical goal programming and optimization |
| gof | Model-diagnostics based on cumulative residuals |
| GOFSN | Goodness-of-fit tests for the family of skew-normal models |
| GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |
| gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |
| googlePublicData | An R library to build Google's Public Data Explorer DSPL
Metadata files |
| googleVis | Interface between R and the Google Visualisation API |
| gooJSON | Google JSON Data Interpreter for R |
| goric | Generalized Order-Restricted Information Criterion |
| GOSim | Computation of functional similarities between GO terms and gene
products; GO enrichement analysis |
| govdat | Interface to API methods for government data |
| gpairs | gpairs: The Generalized Pairs Plot |
| GPArotation | GPA Factor Rotation |
| gpclib | General Polygon Clipping Library for R |
| gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto
distribution |
| gplots | Various R programming tools for plotting data |
| GPseq | gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments |
| gptk | Gaussian Processes Tool-Kit |
| gputools | A few GPU enabled functions |
| GPvam | Maximum Likelihood Estimation of the Generalized Persistence
Value-Added Model |
| grade | Provides functions for matching student-answers to teacher
answers for a variety of data types |
| gRain | Graphical Independence Networks |
| granova | Graphical Analysis of Variance |
| granovaGG | Graphical Analysis of Variance Using ggplot2 |
| graphComp | Visual graph comparison |
| gRapHD | Efficient selection of undirected graphical models for
high-dimensional datasets |
| GrapheR | A multiplatform GUI for drawing customizable graphs in R |
| graphicsQC | Quality Control for Graphics in R |
| GrassmannOptim | Grassmann Manifold Optimization |
| gRbase | A package for graphical modelling in R |
| gRc | Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries |
| gregmisc | Greg's Miscellaneous Functions |
| gridBase | Integration of base and grid graphics |
| gridDebug | Debugging Grid Graphics |
| gridExtra | functions in Grid graphics |
| gridGraphviz | Drawing Graphs with Grid |
| GridR | Executes functions on remote hosts, clusters or grids |
| gridSVG | Export grid graphics as SVG |
| GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |
| gRim | Graphical Interaction Models |
| grImport | Importing Vector Graphics |
| grofit | The package was developed to fit fit many growth curves obtained
under different conditions |
| grouped | Regression Analysis of Grouped and Coarse Data |
| GroupSeq | Performing computations related to group sequential designs |
| growcurves | Bayesian semiparametric growth curve models that additionally
include multiple membership random effects |
| growthrate | Bayesian reconstruction of growth velocity |
| grplasso | Fitting user specified models with Group Lasso penalty |
| grpreg | Regularization paths for regression models with grouped
covariates |
| GRRGI | Gauge R and R Confidence Intervals |
| grt | General Recognition Theory |
| GSA | Gene set analysis |
| gsarima | Two functions for Generalized SARIMA time series simulation |
| gsbDesign | Group Sequential Bayes Design |
| gsDesign | Group Sequential Design |
| gsl | wrapper for the Gnu Scientific Library |
| GSM | Gamma Shape Mixture |
| gsmaRt | Gene Set Microarray Testing |
| gsmoothr | Smoothing tools |
| gss | General Smoothing Splines |
| gstat | spatial and spatio-temporal geostatistical modelling, prediction
and simulation |
| gstudio | GeneticStudio packages for R |
| gsubfn | Utilities for strings and function arguments |
| gtcorr | Calculate efficiencies of group testing algorithms with
correlated responses |
| gtools | Various R programming tools |
| gtx | Genetics ToolboX |
| Guerry | Maps, data and methods related to Guerry (1833) "Moral
Statistics of France" |
| gumbel | Gumbel copula |
| GUniFrac | Generalized UniFrac distances |
| GUTS | GUTS: Fast Calculation of the Likelihood of a Stochastic
Survival Model |
| gvcm.cat | Regularized Categorial Effects/Categorial Effect Modifiers in
GLMs |
| gvlma | Global Validation of Linear Models Assumptions |
| GWAF | Genome-wide association/interaction analyses with family data |
| GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |
| GWAtoolbox | GWAS Quality Control |
| gwerAM | Controlling the genome-wide type I error rate in association
mapping experiments |
| gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |
| gWidgetsRGtk2 | Toolkit implementation of gWidgets for RGtk2 |
| gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |
| gWidgetsWWW | Toolkit implementation of the gWidgets API for use with web
pages |
| GWRM | GWRM |
| gwrr | Geographically weighted regression with penalties and diagnostic
tools |
|
| h5r | Interface to HDF5 Files |
| haarfisz | Software to perform Haar Fisz transforms |
| HAC | Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC) |
| hacks | Convenient R Functions |
| HadoopStreaming | Utilities for using R scripts in Hadoop streaming |
| hapassoc | Inference of trait associations with SNP haplotypes and other
attributes using the EM Algorithm |
| HapEstXXR | HapEstXXR |
| HAPim | HapIM |
| Haplin | Analyzing case-parent triad and/or case-control data with SNP
haplotypes |
| haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data |
| HaploSim | HaploSim |
| haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous |
| hapsim | Haplotype Data Simulation |
| HardyWeinberg | Graphical tests for Hardy-Weinberg equilibrium |
| harvestr | A Parallel Simulation Framework |
| hash | Full feature implementation of hash/associated
arrays/dictionaries |
| hbim | Hill/Bliss Independence Model for Combination Vaccines |
| hbmem | Hierarchical Bayesian Analysis of Recognition Memory |
| hda | Heteroscedastic Discriminant Analysis |
| HDclassif | High Dimensionnal Supervised Classification and Clustering |
| hddplot | Use known groups in high-dimensional data to derive scores for
plots |
| hdeco | Hierarchical DECOmposition of Entropy for Categorical Map
Comparisons |
| hdf5 | HDF5 |
| hdlm | Fitting High Dimensional Linear Models |
| HDMD | Statistical Analysis Tools for High Dimension Molecular Data
(HDMD) |
| hdrcde | Highest density regions and conditional density estimation |
| heatmap.plus | Heatmap with more sensible behavior |
| heavy | Package for outliers accomodation using heavy-tailed
distributions |
| helloJavaWorld | Hello Java World |
| helpr | Help for R |
| heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |
| hergm | Hierarchical Exponential-Family Random Graph Models |
| hett | Heteroscedastic t-regression |
| hexbin | Hexagonal Binning Routines |
| hexView | Viewing Binary Files |
| HFWutils | csv import, csv export, garbage collection,string matching and
passing by reference |
| hgam | High-dimensional Additive Modelling |
| hglm | Hierarchical Generalized Linear Models |
| HGLMMM | Hierarchical Generalized Linear Models |
| HH | Statistical Analysis and Data Display: Heiberger and Holland |
| HI | Simulation from distributions supported by nested hyperplanes |
| HiddenMarkov | Hidden Markov Models |
| HiDimDA | High Dimensional Discriminant Analysis |
| hierfstat | Estimation and tests of hierarchical F-statistics |
| hier.part | Hierarchical Partitioning |
| HIest | Hybrid index estimation |
| highlight | Syntax highlighter |
| hints | Provide hints on what to do next |
| hisemi | Hierarchical Semiparametric Regression of Test Statistics |
| HistData | Data sets from the history of statistics and data visualization |
| histogram | Construction of regular and irregular histograms with different
options for automatic choice of bins |
| hitandrun | "Hit and Run" method for sampling uniformly form convex shapes |
| hive | Hadoop InteractiVE |
| HiveR | 2D and 3D Hive Plots for R |
| HLMdiag | Diagnostic tools for two-level normal hierarchical linear models |
| hlr | Hidden Logistic Regression |
| Hmisc | Harrell Miscellaneous |
| HMM | HMM - Hidden Markov Models |
| hmm.discnp | Hidden Markov models with discrete non-parametric observation
distributions |
| HMMmix | The HMMmix (HMM with mixture of gaussians as emission
distribution) package |
| HMP | Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP |
| HMPTrees | Statistical Object Oriented Data Analysis of RDP-based Taxonomic
trees from Human Microbiome Data: Modeling, Visualization, and
Two-Group Comparison |
| HMR | Flux estimation with static chamber data |
| hof | More higher order functions for R |
| holdem | Texas Holdem simulator |
| Holidays | Holiday and halfday data, for use with the TimeWarp package |
| homals | Gifi Methods for Optimal Scaling |
| homeR | Functions useful for building physics |
| homtest | Homogeneity tests for Regional Frequency Analysis |
| hot | Computation on micro-arrays |
| Hotelling | Hotelling's T-squared test and variants |
| hotspots | Hot spots |
| howmany | A lower bound for the number of correct rejections |
| HPbayes | Heligman Pollard mortality model parameter estimation using
Bayesian Melding with Incremental Mixture Importance Sampling |
| HSAUR | A Handbook of Statistical Analyses Using R |
| HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |
| hsmm | Hidden Semi Markov Models |
| HSROC | Joint meta-analysis of diagnostic test sensitivity and
specificity with or without a gold standard reference test |
| HTMLUtils | Facilitates automated HTML report creation |
| hts | Hierarchical and grouped time series |
| HTSCluster | Clustering high throughput sequencing (HTS) data |
| httpRequest | Basic HTTP Request |
| httr | Tools for working with URLs and HTTP |
| huge | High-dimensional Undirected Graph Estimation |
| HumMeth27QCReport | HumMeth27QCReport: quality control and preprocessing of
Illumina's Infinium methylation assays |
| hwde | Models and tests for departure from Hardy-Weinberg equilibrium
and independence between loci |
| HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via
estimation and testing |
| HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem |
| hwriter | HTML Writer - Outputs R objects in HTML format |
| hybridHclust | Hybrid hierarchical clustering |
| HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid
Monte Carlo sampling techniques |
| hydroGOF | Goodness-of-fit functions for comparison of simulated and
observed hydrological time series |
| HydroMe | Estimation of Soil Hydraulic Parameters from Experimental Data |
| hydroPSO | Model-Independent Particle Swarm Optimisation for Environmental
Models |
| hydroTSM | Time series management, analysis and interpolation for
hydrological modelling |
| HyperbolicDist | The hyperbolic distribution |
| hyperdirichlet | A generalization of the Dirichlet distribution |
| hypergeo | The hypergeometric function |
| hyperSpec | Interface for hyperspectral data, i.e. spectra + meta info
(spatial, time, concentration, ...) |
| hypred | Simulation of genomic data in applied genetics |
|
| ibdreg | Regression Methods for IBD Linkage With Covariates |
| IBDsim | Simulation of chromosomal regions shared by family members |
| ibr | Iterative Bias Reduction |
| IBrokers | R API to Interactive Brokers Trader Workstation |
| iBUGS | An Interface to R2WinBUGS by gWidgets |
| IC2 | Inequality and Concentration Indices and Curves |
| ic50 | Standardized high-throughput evaluation of cell-based compound
screens |
| icaOcularCorrection | Independent Components Analysis (ICA) based eye-movement
correction |
| ICC | Functions facilitating the estimation of the Intraclass
Correlation Coefficient |
| ICE | Iterated Conditional Expectation |
| ICEinfer | Incremental Cost-Effectiveness (ICE) Statistical Inference from
Two Unbiased Samples |
| ic.infer | Inequality constrained inference in linear normal situations |
| iCluster | Integrative clustering of multiple genomic data types |
| icomp | ICOMP criterion |
| ICS | Tools for Exploring Multivariate Data via ICS/ICA |
| ICSNP | Tools for Multivariate Nonparametrics |
| idbg | R debugger |
| iDEMO | integrated degradation models |
| identity | Jacquard Condensed Coefficients of Identity |
| IDPmisc | Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch) |
| idr | Irreproducible discovery rate |
| ieeeround | Functions to set and get the IEEE rounding mode |
| ifa | Independent Factor Analysis |
| iFad | An integrative factor analysis model for drug-pathway
association inference |
| IFP | Identifying functional polymorphisms in genetic association
studies |
| ifs | Iterated Function Systems |
| ifultools | Insightful Research Tools |
| iGasso | Genetic association tests |
| iGenomicViewer | Tool for sending interactive bioinformatic heatmaps with
tool-tip content |
| IgorR | Read binary files saved by Igor Pro (including Neuromatic data) |
| igraph | Network analysis and visualization |
| igraph0 | Network analysis and visualization |
| igraphdata | A collection of network data sets for the igraph package |
| igraphtosonia | Convert iGraph graps to SoNIA .son files |
| iid.test | iid-test |
| ImageMetrics | Facilitates image analysis for social scientists |
| Imap | Interactive Mapping |
| imguR | Share plots using the imgur.com image hosting service |
| IMIS | Increamental Mixture Importance Sampling |
| ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using
Instrumental Variable Method |
| imprProbEst | Minimum distance estimation in an imprecise probability model |
| imputation | imputation |
| imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for
Imcomplete Data |
| imputeYn | Imputing the last largest censored datum under weighted least
squares |
| IndependenceTests | Nonparametric tests of independence between random vectors |
| indicspecies | Functions to assess the strength and significance of
relationship of species site group associations |
| ineq | Measuring Inequality, Concentration, and Poverty |
| InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation
in growth trajectories |
| inference | Functions to extract inferential values of a fitted model object |
| influence.ME | Tools for detecting influential data in mixed effects models |
| infoDecompuTE | Information Decomposition of Two-phase Experiments |
| informR | R Tools for Creating Sequence Statistics |
| infotheo | Information-Theoretic Measures |
| inline | Inline C, C++, Fortran function calls from R |
| inlinedocs | Convert inline comments to documentation |
| insideRODE | insideRODE includes buildin functions with deSolve solver and
C/FORTRAN interfaces to nlme, together with compiled codes |
| int64 | 64 bit integer types |
| intamap | procedures for automated interpolation |
| intamapInteractive | procedures for automated interpolation - methods only to be used
interactively, not included in intamap package |
| intcox | Iterated Convex Minorant Algorithm for interval censored event
data |
| integrativeME | integrative mixture of experts |
| integrOmics | end of integrOmics package |
| interactivity | toggle R interactive mode |
| intergraph | Coercion routines for network data objects in R |
| Interpol | Interpolation of amino acid sequences |
| Interpol.T | Hourly interpolation of multiple temperature daily series |
| interval | Weighted Logrank Tests and NPMLE for interval censored data |
| intervals | Tools for working with points and intervals |
| intReg | Interval Regression |
| intRegGOF | Integrated Regression Goodness of Fit |
| introgress | methods for analyzing introgression between divergent lineages |
| ipdmeta | Functions for characterizing subgroup analyses with
meta-analysis |
| iplots | iPlots - interactive graphics for R |
| IPMpack | Builds and analyses Integral Projection Models (IPMs) |
| ipptoolbox | IPP Toolbox |
| ipred | Improved Predictors |
| IPSUR | Introduction to Probability and Statistics Using R |
| ipw | Estimate inverse probability weights |
| IQCC | Improved Quality Control Charts |
| IQMNMR | Identification and Quantification of Metabolites by Using 1D 1H
NMR FID |
| irace | Iterated Racing Procedures |
| iRefR | iRefIndex Manager |
| iRegression | iRegression |
| irlba | Fast partial SVD by implicitly-restarted Lanczos
bidiagonalization |
| irr | Various Coefficients of Interrater Reliability and Agreement |
| irtoys | Simple interface to the estimation and plotting of IRT models |
| irtProb | Utilities and Probability Distributions Related to
Multidimensional Person Item Response Models (IRT) |
| irtrees | Estimation of Tree-Based Item Response Models |
| isa2 | The Iterative Signature Algorithm |
| ISBF | Iterative Selection of Blocks of Features - ISBF |
| isdals | Provides datasets for Introduction to Statistical Data Analysis
for the Life Sciences |
| ISDA.R | interval symbolic data analysis for R |
| ISIPTA | ISIPTA network analysis |
| ismev | An Introduction to Statistical Modeling of Extreme Values |
| Iso | Functions to perform isotonic regression |
| isocir | Isotonic Inference for Circular data |
| ISOcodes | Selected ISO codes |
| IsoGene | Testing for monotonic relationship between gene expression and
doses in a microarray experiment |
| isopam | Isopam (Clustering) |
| isopat | Calculation of isotopic pattern for a given molecular formula |
| isotone | Active set and generalized PAVA for isotone optimization |
| IsotopeR | Stable isotope analysis |
| ISOweek | Week of the year and weekday according to ISO 8601 |
| iSubpathwayMiner | The package can implement the graph-based reconstruction,
analyses, and visualization of the KEGG pathways |
| isva | Independent Surrogate Variable Analysis |
| ISwR | Introductory Statistics with R |
| iteRates | Parametric rate comparison |
| iterators | Iterator construct for R |
| iterLap | Approximate probability densities by iterated Laplace
Approximations |
| itertools | Iterator Tools |
| its | Irregular Time Series |
| itsmr | Time series analysis package for students |
| iv | Information Visualisation with UML and Graphs |
| ivbma | Bayesian Instrumental Variable Estimation and Model
Determination via Conditional Bayes Factors |
| ivivc | A data analysis tool for in vitro-in vivo correlation (IVIVC) |
| iWebPlots | Interactive web-based plots |
| iwtp | Numerical evaluation willingness to pay based on interval data |
|
| JADE | JADE and other BSS methods as well as some BSS performance
criteria |
| JavaGD | Java Graphics Device |
| JGR | JGR - Java Gui for R |
| jit | Just-in-time compiler for the R language |
| JJcorr | Calculates polychorical correlations for several copula
families |
| JM | Joint Modeling of Longitudinal and Survival Data |
| Jmisc | Julian Miscellaneous Function |
| Johnson | Johnson Transformation |
| JohnsonDistribution | Johnson Distribution |
| joineR | Joint modelling of repeated measurements and time-to-event data |
| jointDiag | Joint Approximate Diagonalization of a set of square matrices |
| JointModeling | Joint Modelling of Mean and Dispersion |
| JOP | Joint Optimization Plot |
| JoSAE | Functions for unit-level small area estimators and their
variances |
| jpeg | Read and write JPEG images |
| JPSurv | Methods for population-based cancer survival analysis |
| JudgeIt | JudgeIt |
| Julia | Fractal Image Data Generator |
|
| kappalab | Non-additive measure and integral manipulation functions |
| kappaSize | Sample Size Estimation Functions for Studies of Interobserver
Agreement |
| kaps | K Adaptive Partitioning for Survival data |
| kBestShortestPaths | kbest: Finds K best paths in a given graph |
| Kendall | Kendall rank correlation and Mann-Kendall trend test |
| kequate | The kernel method of test equating |
| kerdiest | Nonparametric kernel estimation of the distribution function.
Bandwidth selection and estimation of related functions |
| kerfdr | semi-parametric kernel-based approach to local fdr estimations |
| kernlab | Kernel-based Machine Learning Lab |
| KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |
| KernSmoothIRT | Nonparametric Item Reponse Theory |
| KFAS | Kalman filter and smoothers for exponential family state space
models |
| kin.cohort | Analysis of kin-cohort studies |
| kinfit | Routines for fitting kinetic models to chemical degradation data |
| kinship2 | Pedigree functions |
| kknn | Weighted k-Nearest Neighbors |
| klaR | Classification and visualization |
| klausuR | Multiple Choice Test Evaluation |
| klin | Linear equations with Kronecker structure |
| km.ci | Confidence intervals for the Kaplan-Meier estimator |
| kmi | Kaplan-Meier multiple imputation for the analysis of cumulative
incidence functions in the competing risks setting |
| kml | K-means for Longitudinal data |
| kml3d | K-means for joint Longitudinal data |
| KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |
| knitr | A general-purpose package for dynamic report generation in R |
| knn | knn-gcv |
| knncat | Nearest-neighbor classification with categorical variables |
| knorm | Microarray Data From Multiple Biologically Interrelated
Experiments |
| kohonen | Supervised and unsupervised self-organising maps |
| KoNLP | Korean NLP Package |
| koRpus | An R Package for Text Analysis |
| kriging | Ordinary Kriging |
| KrigInv | Kriging-based Inversion for Deterministic and Noisy Computer
Experiments |
| KRLS | Kernel-based Regularized Least Squares (KRLS) |
| ks | Kernel smoothing |
| KsPlot | Check the power of seveal statistical models |
| kst | Knowledge Space Theory |
| ktspair | k-Top Scoring Pairs for Microarray Classification |
| kulife | Datasets and functions from the Faculty of Life Sciences,
University of Copenhagen |
| kza | Kolmogorov-Zurbenko Adaptive Filters |
| kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |
| kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |
|
| labdsv | Ordination and Multivariate Analysis for Ecology |
| labeledLoop | Labeled Loop |
| labeling | Axis Labeling |
| labeltodendro | Convert labels or tables to a dendrogram |
| labstatR | Libreria del Laboratorio di Statistica con R |
| laeken | Estimation of indicators on social exclusion and poverty |
| laercio | Duncan test, Tukey test and Scott-Knott test |
| LaF | Fast access to large ASCII files |
| Lahman | Sean Lahman's Baseball Database |
| Lambda4 | Estimation techniques for the reliability estimate: Maximized
Lambda4 |
| LambertW | Analyze and Gaussianize skewed, heavy-tailed data |
| lancet.iraqmortality | Surveys of Iraq Mortality Published in The Lancet |
| landsat | Radiometric and topographic correction of satellite imagery |
| languageR | Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics" |
| LaplacesDemon | Software for Bayesian Inference |
| LargeRegression | Large Regressions |
| lars | Least Angle Regression, Lasso and Forward Stagewise |
| laser | Likelihood Analysis of Speciation/Extinction Rates from
Phylogenies |
| lasso2 | L1 constrained estimation aka ‘lasso’ |
| lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting |
| latdiag | Draws diagrams useful for checking latent scales |
| lattice | Lattice Graphics |
| latticeDensity | Density estimation and nonparametric regression on irregular
regions |
| latticedl | Lattice direct labels |
| latticeExtra | Extra Graphical Utilities Based on Lattice |
| LatticeKrig | Multiresolution Kriging based on Markov random fields |
| latticist | A graphical user interface for exploratory visualisation |
| lava | Linear Latent Variable Models |
| lavaan | Latent Variable Analysis |
| lava.tobit | LVM with censored and binary outcomes |
| lawstat | An R package for biostatistics, public policy, and law |
| lazy | Lazy Learning for Local Regression |
| lazyWeave | LaTeX Wrappers for R Users |
| LCAextend | Latent Class Analysis (LCA) with familial dependence in extended
pedigrees |
| lcda | Latent Class Discriminant Analysis |
| LCFdata | Data sets for package “LMERConvenienceFunctions” |
| lcmm | Estimation of various latent class mixed models, joint latent
class mixed models and mixed models for curvilinear outcomes |
| lcmr | lcmr package |
| lda | Collapsed Gibbs sampling methods for topic models |
| lda.cv | Cross-validation for linear discriminate analysis |
| ldbounds | Lan-DeMets Method for Group Sequential Boundaries |
| LDcorSV | LDcorSV |
| ldDesign | Design of experiments for detection of linkage disequilibrium |
| LDdiag | Link Function and Distribution Diagnostic Test for Social
Science Researchers |
| LDheatmap | Graphical display of pairwise linkage disequilibria between SNPs |
| ldlasso | LD LASSO Regression for SNP Association Study |
| LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg
Equilibrium |
| LeafAngle | Fits, plots, and summarizes leaf angle distributions |
| LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring
Genotypes |
| leapp | latent effect adjustment after primary projection |
| leaps | regression subset selection |
| LearnBayes | Functions for Learning Bayesian Inference |
| LearnEDA | Functions for Learning Exploratory Data Analysis |
| leiv | Bivariate linear errors-in-variables estimation |
| LeLogicielR | Functions and datasets to accompany the book "Le logiciel R:
Maitriser le langage, Effectuer des analyses statistiques"
(french) |
| lemma | Laplace approximated EM Microarray Analysis |
| lessR | Less Code, More Results |
| lestat | A package for LEarning STATistics |
| lfe | Linear Group Fixed Effects |
| lga | Tools for linear grouping analysis (LGA) |
| lgcp | Log-Gaussian Cox Process |
| LGS | simulating Linkage Group Selection (LGS) |
| lgtdl | A set of methods for longitudinal data objects |
| lhs | Latin Hypercube Samples |
| libamtrack | Computational routines for proton and ion radiotherapy |
| LiblineaR | Linear Predictive Models Based On The Liblinear C/C++ Library |
| lifecontingencies | Package to perform actuarial mathematics for life contingencies
insurances |
| LifeTables | A package to implement HMD model life table system |
| LIHNPSD | Poisson Subordinated Distribution |
| likelihood | Methods for maximum likelihood estimation |
| LIM | Linear Inverse Model examples and solution methods |
| limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |
| limSolve | Solving Linear Inverse Models |
| LinearizedSVR | Linearized Support Vector Regression |
| linkcomm | Tools for Generating, Visualizing, and Analysing Link
Communities in Networks |
| linprog | Linear Programming / Optimization |
| liso | Fitting lasso penalised additive isotone models |
| lisp | List-processing à la SRFI-1 |
| list | Statistical Methods for the Item Count Technique and List
Experiment |
| LIStest | Longest Increasing Subsequence Independence Test |
| ljr | Logistic Joinpoint Regression |
| LLAhclust | Hierarchical clustering of variables or objects based on the
likelihood linkage analysis method |
| lle | Locally linear embedding |
| lmbc | Linear Model Bias Correction for RNA-Seq Data |
| lme4 | Linear mixed-effects models using S4 classes |
| lmec | Linear Mixed-Effects Models with Censored Responses |
| LMERConvenienceFunctions | A suite of functions to back-fit fixed effects and forward-fit
random effects, as well as other miscellaneous functions |
| lmeSplines | lmeSplines |
| lmf | Functions for estimation and inference of selection in
age-structured populations |
| lmm | Linear mixed models |
| lmmfit | Goodness-of-fit-measures for linear mixed models with
one-level-grouping |
| lmmlasso | Linear mixed-effects models with Lasso |
| lmodel2 | Model II Regression |
| lmom | L-moments |
| lmomco | L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions |
| Lmoments | L-moments and quantile mixtures |
| lmomRFA | Regional frequency analysis using L-moments |
| lmPerm | Permutation tests for linear models |
| lmSupport | Support for Linear Models |
| lmtest | Testing Linear Regression Models |
| LN3GV | LN3GV |
| localdepth | Local Depth |
| locfdr | Computes local false discovery rates |
| locfit | Local Regression, Likelihood and Density Estimation |
| locpol | Kernel local polynomial regression |
| lodplot | Plot a genome scan |
| log4r | A simple logging system for R, based on log4j |
| LogConcDEAD | Log-concave Density Estimation in Arbitrary Dimensions |
| logconcens | Maximum likelihood estimation of a log-concave density based on
censored data |
| logcondens | Estimate a Log-Concave Probability Density from iid Observations |
| logcondiscr | Estimate a Log-Concave Probability Mass function from Discrete
i.i.d. Observations |
| logging | a tentative logging package |
| LogicForest | Logic Forest |
| LogicReg | Logic Regression |
| logistf | Firth's bias reduced logistic regression |
| LogitNet | Infer network based on binary arrays using regularized logistic
regression |
| logitnorm | Functions for the logitnormal distribution |
| loglognorm | Double log normal distribution functions |
| logregperm | Inference in Logistic Regression |
| logspline | Logspline density estimation routines |
| lokern | Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth |
| longitudinal | Analysis of Multiple Time Course Data |
| longitudinalData | Longitudinal Data |
| longmemo | Statistics for Long-Memory Processes (Jan Beran) – Data and
Functions |
| longpower | Sample size calculations for longitudinal data |
| longRPart | Recursive partitioning of longitudinal data using mixed-effects
models |
| LoopAnalyst | A collection of tools to conduct Levins' Loop Analysis |
| lordif | Logistic Regression Differential Item Functioning using IRT |
| lorec | LOw Rand and sparsE Covariance matrix estimation |
| lossDev | Robust Loss Development Using MCMC |
| LOST | Missing morphometric data simulation and estimation |
| LowRankQP | Low Rank Quadratic Programming |
| lpc | Lassoed principal components for testing significance of
features |
| LPCM | Local principal curve methods |
| lpridge | Local Polynomial (Ridge) Regression |
| lpSolve | Interface to Lp_solve v. 5.5 to solve linear/integer programs |
| lpSolveAPI | R Interface for lp_solve version 5.5.2.0 |
| lqa | Penalized Likelihood Inference for GLMs |
| lqmm | Linear Quantile Mixed Models |
| LS2W | Locally stationary two-dimensional wavelet process estimation
scheme |
| lsa | Latent Semantic Analysis |
| LSD | Lots of Superior Depictions |
| lspls | LS-PLS Models |
| lsr | Companion to "Learning Statistics with R" |
| lss | the accelerated failure time model to right censored data based
on least-squares principle |
| ltm | Latent Trait Models under IRT |
| LTPDvar | LTPD plans for sampling inspection by variables |
| LTR | Perform LTR analysis on microarray data |
| ltsa | Linear time series analysis |
| lubridate | Make dealing with dates a little easier |
| luca | Likelihood inference from case-control data Under Covariate
Assumptions (LUCA) |
| LVQTools | Learning Vector Quantization Tools |
| lxb | Fast LXB file reader |
|
| M3 | Reading M3 files |
| MAc | Meta-Analysis with Correlations |
| MAclinical | Class prediction based on microarray data and clinical
parameters |
| MAd | Meta-Analysis with Mean Differences |
| MADAM | This package provides some basic methods for meta-analysis |
| Maeswrap | Wrapper functions for MAESTRA/MAESPA |
| magic | create and investigate magic squares |
| magma | Matrix Algebra on GPU and Multicore Architectures |
| magnets | Simulate micro-magnets dynamics |
| mail | Sending Email Notifications from R |
| MAINT.Data | Model and Analize Interval Data |
| makeProject | Creates an empty package framework for the LCFD format |
| makeR | Package for managing projects with multiple versions derived
from a single source repository |
| malaria.em | EM Estimation of Malaria Haplotype Probabilities from Multiply
Infected Human Blood Samples |
| MALDIquant | Quantitative Analysis of Mass Spectrometric Data |
| MAMS | Designing Multi-Arm Multi-Stage Studies |
| MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE)
weights |
| Mangrove | Risk prediction on trees |
| mapdata | Extra Map Databases |
| mapLD | Linkage Disequilibrium Mapping |
| MAPLES | Smoothed age profile estimation |
| mapproj | Map Projections |
| maps | Draw Geographical Maps |
| maptools | Tools for reading and handling spatial objects |
| maptree | Mapping, pruning, and graphing tree models |
| mAr | Multivariate AutoRegressive analysis |
| mar1s | Multiplicative AR(1) with Seasonal Processes |
| marelac | Tools for Aquatic Sciences |
| marg | Approximate marginal inference for regression-scale models |
| marginalmodelplots | Marginal Mean Model Plots |
| marginTree | marginTree: margin trees for high-dimensional classification |
| margLikArrogance | Marginal Likelihood Computation via Arrogance Sampling |
| markdown | Markdown rendering for R |
| MarkedPointProcess | Analysis of Marks of Marked Point Processes |
| maRketSim | Market simulator for R |
| marqLevAlg | An algorithm for least-squares curve fitting |
| MARSS | Multivariate Autoregressive State-Space Modeling |
| MASS | Support Functions and Datasets for Venables and Ripley's MASS |
| MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |
| MAT | Multidimensional Adaptive Testing (MAT) |
| Matching | Multivariate and Propensity Score Matching with Balance
Optimization |
| MatchIt | MatchIt |
| mathgraph | Directed and undirected graphs |
| matlab | MATLAB emulation package |
| Matrix | Sparse and Dense Matrix Classes and Methods |
| matrixcalc | Collection of functions for matrix differential calculus |
| MatrixEQTL | Matrix eQTL: Ultra fast eQTL analysis via large matrix
operations |
| MatrixModels | Modelling with Sparse And Dense Matrices |
| matrixStats | Methods that apply to rows and columns of a matrix |
| MAVTgsa | Ordinary least square test and Multivariate Analysis Of Variance
test with n contrasts |
| MaXact | Exact max-type Cochran-Armitage trend test(CATT) |
| maxent | Low-memory Multinomial Logistic Regression with Support for Text
Classification |
| maxLik | Maximum Likelihood Estimation |
| maxlike | Model species distributions by estimating the probability of
occurrence using presence-only data |
| maxLinear | Conditional Samplings for Max-Linear Models |
| maxstat | Maximally Selected Rank Statistics |
| MBA | Multilevel B-spline Approximation |
| MBCluster.Seq | Model-Based Clustering for RNA-seq Data |
| MBESS | MBESS |
| mblm | Median-Based Linear Models |
| mbmdr | Model Based Multifactor Dimensionality Reduction |
| mboost | Model-Based Boosting |
| mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |
| MCAPS | MCAPS data and results |
| mcbiopi | Matrix Computation Based Identification Of Prime Implicants |
| mcclust | Process an MCMC Sample of Clusterings |
| MCE | Tools for evaluating Monte Carlo Error |
| mcga | Machine coded genetic algorithms for real-valued optimization
problems |
| mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |
| MChtest | Monte Carlo hypothesis tests with Sequential Stopping |
| MCLIME | Simultaneous Estimation of the Regression Coefficients and
Precision Matrix |
| mclogit | Mixed Conditional Logit |
| mclust | Model-Based Clustering / Normal Mixture Modeling |
| mcmc | Markov Chain Monte Carlo |
| MCMCglmm | MCMC Generalised Linear Mixed Models |
| MCMChybridGP | Hybrid Markov chain Monte Carlo using Gaussian Processes |
| MCMCpack | Markov chain Monte Carlo (MCMC) Package |
| mcmcplots | Create Plots from MCMC Output |
| mcmcse | Monte Carlo standard errors for MCMC |
| mco | Multi criteria optimization algorithms and related functions |
| Mcomp | Data from the M-competitions |
| MCPAN | Multiple comparisons using normal approximation |
| McParre | Run a Regenerative Markov chain in Parallel on a Cluster |
| MCPMod | Design and Analysis of Dose-Finding Studies (see also
DoseFinding package) |
| mcprofile | Multiple Contrast Profiles |
| mcsm | Functions for Monte Carlo Methods with R |
| McSpatial | Nonparametric spatial data analysis |
| MCUSUM | Multivariate Cumulative Sum (MCUSUM) Control Chart |
| mda | Mixture and flexible discriminant analysis |
| MDM | Multinomial Diversity Model |
| MDR | Detect gene-gene interactions using multifactor dimensionality
reduction |
| meboot | Maximum Entropy Bootstrap for Time Series |
| mecdf | Multivariate Empirical Cumulative Distribution Functions |
| medAdherence | Medication Adherence: Commonly Used Definitions |
| mederrRank | Bayesian Methods for Identifying the Most Harmful Medication
Errors |
| mediation | R Package for Causal Mediation Analysis |
| MeDiChI | MeDiChI ChIP-chip deconvolution library |
| mefa | Multivariate Data Handling in Ecology and Biogeography |
| mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |
| meifly | Interactive model exploration using GGobi |
| mem | Moving Epidemics Method R Package |
| memisc | Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation |
| memoise | Memoise functions |
| MEMSS | Data sets from Mixed-effects Models in S |
| MergeGUI | A GUI for Merging Datasets in R |
| merror | Accuracy and Precision of Measurements |
| meta | Meta-Analysis with R |
| MetABEL | meta-analysis of genome-wide SNP association results |
| MetabolAnalyze | Probabilistic latent variable models for metabolomic data |
| Metabonomic | GUI for Metabonomic Analysis |
| metacor | Meta-analysis of correlation coefficients |
| Metadata | Collates Metadata for Climate Surface Stations |
| MetaDE | Meta analysis of multiple microarray data |
| metafor | Meta-Analysis Package for R |
| metaLik | Likelihood inference in meta-analysis and meta-regression
models |
| metaMA | Meta-analysis for MicroArrays |
| MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic
data |
| MetaQC | MetaQC: Objective Quality Control and Inclusion/Exclusion
Criteria for Genomic Meta-Analysis |
| metatest | Fit and test metaregression models |
| Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |
| MethComp | Functions for analysis of method comparison studies |
| metrumrg | Pharmacometric tools for data preparation, modeling, simulation,
and reporting |
| mets | Analysis of Multivariate Event Times |
| MEWMA | Multivariate Exponentially Weighted Moving Average (MEWMA)
Control Chart |
| MFDA | Model Based Functional Data Analysis |
| MFDF | Modeling Functional Data in Finance |
| mFilter | Miscellaneous time series filters |
| mfp | Multivariable Fractional Polynomials |
| mfr | Minimal Free Resolutions of Graph Edge Ideals |
| MFSAS | Creation and Evaluation of Multilevel Fixed and Sequential
Sampling Plans |
| mgcv | Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation |
| mgpd | mgpd: Functions for multivariate generalized Pareto distribution
(MGPD of Type II) |
| mgraph | Graphing map attributes and non-map variables in R |
| MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using
adaptive Metropolis-Hastings sampling |
| mhsmm | Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences |
| mht | Multiple Hypotheses Testing For Variable Selection |
| mhurdle | Estimation of models with limited dependent variables |
| mi | Missing Data Imputation and Model Checking |
| mice | Multivariate Imputation by Chained Equations |
| micEcon | Microeconomic Analysis and Modelling |
| micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |
| micEconCES | Analysis with the Constant Elasticity of Scale (CES) function |
| micEconSNQP | Symmetric Normalized Quadratic Profit Function |
| microbenchmark | Sub microsecond accurate timing functions |
| MIfuns | Pharmacometric tools for data preparation, modeling, simulation,
and reporting |
| MigClim | Implementing dispersal into species distribution models |
| migui | Graphical User Interface of the mi Package |
| MImix | Mixture summary method for multiple imputation |
| mimR | A package for graphical modelling in R |
| MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |
| Miney | Implementation of the Well-Known Game to Clear Bombs from a
Given Field (Matrix) |
| minimax | Minimax distribution family |
| minpack.lm | R interface to the Levenberg-Marquardt nonlinear least-squares
algorithm found in MINPACK, plus support for bounds |
| minPtest | Gene region-level testing procedure for SNP data, using the min
P test resampling approach |
| minqa | Derivative-free optimization algorithms by quadratic
approximation |
| minxent | Entropy Optimization Distributions |
| miP | Multiple Imputation Plots |
| MIPHENO | Mutant Identification through Probabilistic High throughput
Enabled NOrmalization |
| mirt | Multidimensional Item Response Theory |
| miRtest | combined miRNA- and mRNA-testing |
| MISA | Bayesian Model Search and Multilevel Inference for SNP
Association Studies |
| misc3d | Miscellaneous 3D Plots |
| miscFuncs | Miscellaneous Useful Functions |
| MiscPsycho | Miscellaneous Psychometric Analyses |
| miscTools | Miscellanneous Tools and Utilities |
| missForest | Nonparametric Missing Value Imputation using Random Forest |
| MissingDataGUI | A GUI for Missing Data Exploration |
| missMDA | Handling missing values with/in multivariate data analysis
(principal component methods) |
| mitools | Tools for multiple imputation of missing data |
| mix | Estimation/multiple Imputation for Mixed Categorical and
Continuous Data |
| mixAK | Mixture of methods including mixtures |
| mixcat | Mixed effects cumulative link and logistic regression models |
| mixdist | Finite Mixture Distribution Models |
| mixedQF | Estimator with Qudratics Forms in Mixeds Models |
| mixer | Random graph clustering |
| mixexp | Design and analysis of mixture experiments |
| mixfdr | Computes false discovery rates and effect sizes using normal
mixtures |
| mixlow | mixlow method for assessing drug synergism |
| MixMod | Analysis of Mixed Models |
| mixOmics | Omics Data Integration Project |
| mixPHM | Mixtures of proportional hazard models |
| mixRasch | Mixture Rasch Models with JMLE |
| mixreg | Functions to fit mixtures of regressions |
| mixsep | Forensic Genetics DNA Mixture Separation |
| MixSim | Simulating Data to Study Performance of Clustering Algorithms |
| mixsmsn | Fitting finite mixture of scale mixture of skew-normal
distributions |
| mixstock | functions for mixed stock analysis |
| mixtools | Tools for analyzing finite mixture models |
| mkin | Routines for fitting kinetic models with one or more state
variables to chemical degradation data |
| MKLE | Maximum kernel likelihood estimation |
| MKmisc | Miscellaneous Functions from M. Kohl |
| mkssd | Efficient multi-level k-circulant supersaturated designs |
| mlbench | Machine Learning Benchmark Problems |
| MLCM | Maximum Likelihood Conjoint Measurement |
| MLDA | Methylation Linear Discriminant Analysis (MLDA) |
| MLDS | Maximum Likelihood Difference Scaling |
| MLEcens | Computation of the MLE for bivariate (interval) censored data |
| mlegp | Maximum Likelihood Estimates of Gaussian Processes |
| MLEP | Maximum likelihood estimate of penetrance parameters |
| mleur | Maximum likelihood unit root test |
| mlgt | Multi-Locus Geno-Typing |
| mlmmm | ML estimation under multivariate linear mixed models with
missing values |
| mlmRev | Examples from Multilevel Modelling Software Review |
| mlogit | multinomial logit model |
| mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |
| MLPAstats | MLPA analysis to detect gains and loses in genes |
| MM | The multiplicative multinomial distribution |
| mmand | Mathematical Morphology in Any Number of Dimensions |
| mmap | Map Pages of Memory |
| mmcm | Modified Maximum Contrast Method |
| mmds | Mixture Model Distance Sampling (mmds) |
| mmeln | MMELN : Estimation of multinormal mixture distribution |
| MMIX | Model selection uncertainty and model mixing |
| mmm2 | Multivariate marginal models with shared regression parameters |
| mmod | Modern measures of population differentiation |
| MMST | DATASETS FROM MMST |
| MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks |
| mnormt | The multivariate normal and t distributions |
| MNP | R Package for Fitting the Multinomial Probit Model |
| mnspc | Multivariate Nonparametric Statistical Process Control |
| mobForest | Model based Random Forest analysis |
| Mobilize | Mobilize plots and functions |
| moc | GENERAL NONLINEAR MIXTURES OF CURVES |
| MOCCA | Multi-objective optimization for collecting cluster alternatives |
| Modalclust | Hierarchical Modal Clustering |
| modeest | Mode Estimation |
| modehunt | Multiscale Analysis for Density Functions |
| modelcf | Modeling physical computer codes with functional outputs using
clustering and dimensionality reduction |
| modelfree | Model-free estimation of a psychometric function |
| ModelGood | Validation of prediction models |
| ModelMap | Creates Random Forest and Stochastic Gradient Boosting Models,
and applies them to GIS .img files to build detailed prediction
maps |
| modeltools | Tools and Classes for Statistical Models |
| modTempEff | Modelling temperature effects using time series data |
| moduleColor | Basic module functions |
| mokken | Mokken Scale Analysis in R |
| mombf | Moment and Inverse Moment Bayes factors |
| moments | Moments, cumulants, skewness, kurtosis and related tests |
| Momocs | Shape Analysis of Outlines |
| mondate | Keep track of dates in terms of months |
| monmlp | Monotone multi-layer perceptron neural network |
| monomvn | Estimation for multivariate normal and Student-t data with
monotone missingness |
| monreg | Nonparametric monotone regression |
| moonsun | Basic astronomical calculations with R |
| MorseGen | Simple raw data generator based on user-specified summary
statistics |
| MortalitySmooth | Smoothing and forecasting Poisson counts with P-splines |
| mosaic | Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities |
| mosaicManip | Project MOSAIC (mosaic-web.org) manipulate examples |
| motmot | Models of Trait Macroevolution on Trees |
| moult | Models for Analysing Moult Data |
| movMF | Mixtures of von Mises Fisher Distributions |
| mpa | CoWords Method |
| mpc | MPC - Multiple Precision Complex Library |
| MPCI | Multivariate Process Capability Indices (MPCI) |
| MplusAutomation | Automating Mplus Model Estimation and Interpretation |
| mpm | Multivariate Projection Methods |
| mpmcorrelogram | Multivariate Partial Mantel Correlogram |
| mpoly | Symbolic computation and more with multivariate polynomials |
| mprobit | Multivariate probit model for binary/ordinal response |
| mpt | Multinomial Processing Tree (MPT) Models |
| MPTinR | Analyze Multinomial Processing Tree Models |
| MPV | Data Sets from Montgomery, Peck and Vining's Book |
| mra | Analysis of Mark-Recapture data |
| mratios | Inferences for ratios of coefficients in the general linear
model |
| MRCE | MRCE |
| mrdrc | Model-robust concentration-response analysis |
| mrds | Mark-Recapture Distance Sampling (mrds) |
| mritc | MRI tissue classification |
| mRm | mRm: An R package for conditional maximum likelihood estimation
in mixed Rasch models |
| mrp | Multilevel Regression and Poststratification |
| mrpdata | Data for Multilevel Regression and Poststratification |
| mrt | Wright & London's Modern Regression Techniques |
| MsatAllele | Visualizes the scoring and binning of microsatellite fragment
sizes |
| msBreast | Protein Mass Spectra Dataset from a Breast Cancer Study |
| MSBVAR | Markov-Switching, Bayesian, Vector Autoregression Models |
| msDilution | Protein Mass Spectra Dataset from a Dilution Experiment |
| mseapca | Metabolite set enrichment analysis for factor loading in
principal component analysis |
| MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS)
data |
| MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |
| mseq | Modeling non-uniformity in short-read rates in RNA-Seq data |
| MSG | Data and functions for the book Modern Statistical Graphics |
| msgps | Degrees of freedom of elastic net, adaptive lasso and
generalized elastic net |
| msir | Model-based Sliced Inverse Regression |
| msm | Multi-state Markov and hidden Markov models in continuous time |
| mspath | Multi-state Path-Dependent Models in Discrete Time |
| msProcess | Protein Mass Spectra Processing |
| msProstate | Protein Mass Spectra Dataset from a Prostate Cancer Study |
| msr | Morse-Smale approximation, regression and visualization |
| msSurv | Nonparametric Estimation for Multistate Models |
| mstate | Data preparation, estimation and prediction in multi-state
models |
| MSToolkit | The MSToolkit library for clinical trial design |
| mtcreator | Creating MAGE-TAB files using mtcreator |
| mtsc | Multivariate Timeseries Clusters |
| mtsdi | Multivariate time series data imputation |
| MTSKNN | Multivariate two-sample tests based on K-nearest-neighbors |
| MUCflights | Munich Franz-Josef-Strauss Airport Pattern Analysis |
| mugnet | Mixture of Gaussian Bayesian Network Model |
| muhaz | Hazard Function Estimation in Survival Analysis |
| multcomp | Simultaneous Inference in General Parametric Models |
| multcompView | Visualizations of Paired Comparisons |
| MultEq | Multiple Equivalence Tests and Simultaneous Confidence Intervals |
| multibiplotGUI | Multibiplot Analysis in R |
| multic | Quantitative linkage analysis tools using the variance
components approach |
| Multiclasstesting | Performance of N-ary classification testing |
| multicool | Permutations of multisets in cool-lex order |
| multicore | Parallel processing of R code on machines with multiple cores or
CPUs |
| multilevel | Multilevel Functions |
| multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |
| MultiOrd | Generation of multivariate ordinal variates |
| MultiPhen | MultiPhen, a package for the genetic association testing of
multiple phenotypes |
| multiPIM | Variable Importance Analysis with Population Intervention Models |
| multipol | multivariate polynomials |
| multisensi | Multivariate Sensitivity Analysis |
| multitable | Simultaneous manipulation of multiple arrays of data, with
data.list objects |
| multitaper | Multitaper Spectral Analysis |
| multivator | A multivariate emulator |
| multmod | Testing of multiple outcomes |
| multxpert | Common Multiple Testing Procedures and Gatekeeping Procedures |
| muma | Metabolomic Univariate and Multivariate Analysis |
| MuMIn | Multi-model inference |
| munfold | Metric Unfolding |
| munsell | Munsell colour system |
| muRL | Mailmerge using R, LaTeX, and the Web |
| mutatr | Mutable objects for R |
| mutoss | Unified multiple testing procedures |
| mutossGUI | A graphical user interface for the MuToss Project |
| MVA | An Introduction to Applied Multivariate Analysis with R |
| mvabund | statistical methods for analysing multivariate abundance data |
| mvbutils | Workspace organization, code and documentation editing, package
prep and editing, etc |
| mvmeta | Multivariate meta-analysis and meta-regression |
| mvna | Nelson-Aalen estimator of the cumulative hazard in multistate
models |
| mvngGrAd | Software for moving grid adjustment in plant breeding field
trials |
| mvnmle | ML estimation for multivariate normal data with missing values |
| mvnormtest | Normality test for multivariate variables |
| mvoutlier | Multivariate outlier detection based on robust methods |
| mvpart | Multivariate partitioning |
| MVPARTwrap | MVPARTwrap: Additional functionnalities for package mvpart |
| MVpower | Give power for a given effect size using multivariate
classification methods |
| mvProbit | Multivariate Probit Models |
| MVR | Mean-Variance Regularization |
| mvsf | Shapiro-Francia Multivariate Normality Test |
| mvShapiroTest | Generalized Shapiro-Wilk test for multivariate normality |
| mvtBinaryEP | Generates Correlated Binary Data |
| mvtnorm | Multivariate Normal and t Distributions |
| mvtsplot | Multivariate Time Series Plot |
| mxkssd | Efficient mixed-level k-circulant supersaturated designs |
| myepisodes | MyEpisodes RSS/API functions |
|
| nacopula | Nested Archimedean Copulas |
| NADA | Nondetects And Data Analysis for environmental data |
| nadiv | Functions to construct non-additive genetic relatedness matrices |
| nanop | tools for nanoparticle simulation and PDF calculation |
| NanoStringNorm | Normalize NanoString miRNA and mRNA data |
| NBDdirichlet | NBD-Dirichlet model of consumer buying behavior for marketing
research |
| nbpMatching | functions for non-bipartite optimal matching |
| NBPSeq | The NBP Negative Binomial Model for Assessing Differential Gene
Expression from RNA-Seq |
| NCBI2R | NCBI2R-An R package to navigate and annotate genes and SNPs |
| ncdf | Interface to Unidata netCDF data files |
| ncdf4 | Interface to Unidata netCDF (version 4 or earlier) format data
files |
| ncf | spatial nonparametric covariance functions |
| ncvreg | Regularization paths for SCAD- and MCP-penalized regression
models |
| ndl | Naive Discriminative Learning |
| ndvits | NDVI Time series extraction and analysis |
| neariso | Near-Isotonic Regression |
| NeatMap | Non-clustered heatmap alternatives |
| negenes | Estimating the number of essential genes in a genome |
| neldermead | R port of the Scilab neldermead module |
| NeMo | Exceptionnal Network Motifs in biological networks |
| NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |
| NetCluster | Clustering for networks |
| NetComp | Network Generation and Comparison |
| NetData | Network Data for McFarland's SNA R labs |
| NetIndices | Estimating network indices, including trophic structure of
foodwebs in R |
| NetPreProc | NetPreProc: Network Pre-Processing and normalization |
| network | Classes for Relational Data |
| NetworkAnalysis | Statistical inference on populations of weighted or unweighted
networks |
| networkDynamic | Dynamic Extensions for Network Objects |
| networksis | Simulate bipartite graphs with fixed marginals through
sequential importance sampling |
| neuralnet | Training of neural networks |
| neuroblastoma | Neuroblastoma |
| neuRosim | Functions to generate fMRI data including activated data, noise
data and resting state data |
| nFactors | Parallel Analysis and Non Graphical Solutions to the Cattell
Scree Test |
| nfda | Nonparametric Functional Data Analysis |
| nFDR | Nonparametric Estimate of FDR Based on Bernstein Polynomials |
| nga | NGA Earthquake Ground Motion Prediction Equations |
| NHPoisson | Modelling and validation of non homogeneous Poisson processes |
| nice | Get or Set UNIX Niceness |
| NightDay | Night and Day Boundary Plot Funtion |
| Nippon | Japanese utility functions and data |
| NISTnls | Nonlinear least squares examples from NIST |
| nlADG | Regression in the Normal Linear ADG Model |
| nleqslv | Solve systems of non linear equations |
| nlme | Linear and Nonlinear Mixed Effects Models |
| nlmeODE | Non-linear mixed-effects modelling in nlme using differential
equations |
| nloptr | R interface to NLopt |
| nlreg | Higher Order Inference for Nonlinear Heteroscedastic Models |
| nlrwr | Nonlinear regression with R |
| nls2 | Non-linear regression with brute force |
| nlsmsn | Fitting nonlinear models with scale mixture of skew-normal
distributions |
| nlstools | Tools for nonlinear regression diagnostics |
| NlsyLinks | Utilities and kinship information for Behavior Genetics and
Developmental research using the NLSY |
| nlt | A nondecimated lifting transform for signal denoising |
| nltm | Non-linear Transformation Models |
| nlts | (non)linear time series analysis |
| NMF | Algorithms and framework for Nonnegative Matrix Factorization
(NMF) |
| NMFN | Non-negative Matrix Factorization |
| NMMAPSlite | NMMAPS Data Lite |
| NMOF | Numerical Methods and Optimization in Finance |
| NMRS | NMR Spectroscopy |
| nnclust | Nearest-neighbour tools for clustering |
| nnet | Feed-forward Neural Networks and Multinomial Log-Linear Models |
| nnls | The Lawson-Hanson algorithm for non-negative least squares
(NNLS) |
| nodeHarvest | Node Harvest for regression and classification |
| noia | Implementation of the Natural and Orthogonal InterAction (NOIA)
model |
| nonbinROC | ROC-type analysis for non-binary gold standards |
| nonparaeff | Nonparametric Methods for Measuring Efficiency and Productivity |
| nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |
| norm | Analysis of multivariate normal datasets with missing values |
| NormalGamma | Normal-gamma convolution model |
| normalp | Package for exponential power distributions (EPD) |
| NORMT3 | Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t |
| normwhn.test | Normality and White Noise Testing |
| nortest | Tests for Normality |
| np | Nonparametric kernel smoothing methods for mixed data types |
| nparcomp | nparcomp-package |
| nparLD | Nonparametric Analysis of Longitudinal Data in Factorial
Experiments |
| npde | Normalised prediction distribution errors for nonlinear
mixed-effect models |
| nplplot | Plotting non-parametric linkage results |
| npmlreg | Nonparametric maximum likelihood estimation for random effect
models |
| NPMPM | tertiary probabilistic model in predictive microbiology for use
in food manufacture |
| nppbib | Nonparametric Partially-Balanced Incomplete Block Design
Analysis |
| npRmpi | Parallel nonparametric kernel smoothing methods for mixed data
types |
| NPsimex | Nonparametric Smoothing for contaminated data using
Simulation-Extrapolation |
| npst | Generalization of Hewitt's Seasonality Test |
| NRAIA | Data sets from "Nonlinear Regression Analysis and Its
Applications" |
| NSA | Post-normalization of total copy numbers |
| nsRFA | Non-supervised Regional Frequency Analysis |
| nullabor | Tools for graphical inference |
| numConversion | Test of accuracy of formatting numbers |
| numDeriv | Accurate Numerical Derivatives |
| nutshell | Data for "R in a Nutshell" |
| nutshellDE | Beispieldaten zu "R in a Nutshell" [deutsche Ausgabe] |
| nws | R functions for NetWorkSpaces and Sleigh |
|
| OAIHarvester | Harvest Metadata Using OAI-PMH v2.0 |
| Oarray | Arrays with arbitrary offsets |
| objectProperties | A factory of self-describing properties |
| objectSignals | objectSignals |
| obliqueRF | Oblique Random Forests from Recursive Linear Model Splits |
| oblique.tree | Oblique Trees for Classification Data |
| obsSens | Sensitivity analysis for Observational studies |
| oc | OC Roll Call Analysis Software |
| occ | Estimates PET neuroreceptor occupancies |
| oce | Analysis of Oceanographic data |
| ocomposition | Gibbs sampler for ordered compositional data |
| ODB | Open Document Databases (.odb) management |
| odesolve | Solvers for Ordinary Differential Equations |
| odfWeave | Sweave processing of Open Document Format (ODF) files |
| odfWeave.survey | Support for odfWeave on the survey package |
| odprism | Optimal design and performance of random intercept and slope
models |
| Ohmage | R Client for Mobilize/Andwellness server |
| OIsurv | Survival analysis supplement to OpenIntro guide |
| OjaNP | Multivariate Methods Based on the Oja Median and Related
Concepts |
| okmesonet | Retrieve Oklahoma Mesonet climatological data |
| OligoSpecificitySystem | Oligo Specificity System |
| OLScurve | OLS growth curve trajectories |
| omd | filter the molecular descriptors for QSAR |
| oncomodel | Maximum likelihood tree models for oncogenesis |
| Oncotree | Estimating oncogenetic trees |
| OneHandClapping | Prediction of condition-specific transcription factor
interactions |
| onemap | Software for constructing genetic maps in experimental crosses:
full-sib, RILs, F2 and backcrosses |
| onion | octonions and quaternions |
| OOmisc | Ozgur-Ozlem Miscellaneous |
| OPE | Outer-product emulator |
| opefimor | Option Pricing and Estimation of Financial Models in R |
| openair | Tools for the analysis of air pollution data |
| OpenCL | Interface allowing R to use OpenCL |
| opencpu.demo | OpenCPU Demo apps |
| opencpu.encode | opencpu object encoder/decoder |
| openintro | OpenIntro data sets and supplemental functions |
| openNLP | openNLP Interface |
| openNLPmodels.en | openNLP Models for English |
| openNLPmodels.es | openNLP Models for Spanish |
| OpenRepGrid | Tools to analyse repertory grid data |
| OpenStreetMap | Access to open street map raster images |
| operators | Additional binary operators for the R language |
| opm | Tools for analysing OmniLog(R) Phenotype Microarray data |
| oposSOM | Package for analysis and visualization of metagenes |
| ops | Optimal Power Space Transformation |
| optBiomarker | Estimation of optimal number of biomarkers for two-group
microarray based classifications at a given error tolerance
level for various classification rules |
| optimbase | R port of the Scilab optimbase module |
| optimsimplex | R port of the Scilab optimsimplex module |
| optimx | A Replacement and Extension of the optim() Function |
| OptionsPdf | This package estimates a mix of lognormal distributions from
interest-rate option data |
| optmatch | Functions for optimal matching |
| optparse | Command line option parser |
| orclus | ORCLUS subspace clustering |
| ORCME | Order Restricted Clustering for Microarray Experiments |
| orddom | Ordinal Dominance Statistics |
| ORDER2PARENT | Estimate parent distributions with data of several order
statistics |
| OrdFacReg | Least squares, logistic, and Cox-regression with ordered
predictors |
| ordinal | Regression Models for Ordinal Data |
| OrdMonReg | Compute least squares estimates of one bounded or two ordered
isotonic regression curves |
| ordPens | Selection and/or Smoothing of Ordinal Predictors |
| OrgMassSpecR | Organic Mass Spectrometry |
| ORIClust | Order-restricted Information Criterion-based Clustering
Algorithm |
| orientlib | Support for orientation data |
| orloca | The package deals with Operations Research LOCational Analysis
models |
| orloca.es | Spanish version of orloca package |
| ORMDR | ORMDR |
| oro.dicom | Rigorous - DICOM Input / Output |
| oro.nifti | Rigorous - NIfTI+ANALYZE+AFNI Input / Output |
| orQA | Order Restricted Assessment Of Microarray Titration Experiments |
| orsk | Convertinging Odds Ratio to Relative Risk with Partial Data
Information |
| orth | Multivariate Logistic Regressions Using Orthogonalized
Residuals |
| orthogonalsplinebasis | Orthogonal Bspline Basis Functions |
| orthopolynom | Collection of functions for orthogonal and orthonormal
polynomials |
| osDesign | Design and analysis of observational studies |
| osmar | OpenStreetMap and R |
| ouch | Ornstein-Uhlenbeck models for phylogenetic comparative
hypotheses |
| outliers | Tests for outliers |
| OUwie | Analysis of evolutionary rates in an OU framework |
| oz | Plot the Australian coastline and states |
|
| p2distance | Welfare's Synthetic Indicator |
| p3state.msm | Analyzing survival data |
| pack | Convert values to/from raw vectors |
| packClassic | Toy example of Pack Classic |
| packdep | Mapping dependencies among R packages |
| packS4 | Toy example of S4 package |
| pacose | iPACOSE, PACOSE and other methods for covariance selection |
| pairedCI | Confidence intervals for the ratio of locations and for the
ratio of scales of two paired samples |
| PairedData | Paired Data Analysis |
| pairheatmap | A tool for comparing heatmaps |
| PairTrading | classical pair trading based on cointegration in finance |
| PairViz | Visualization using Eulerian tours and Hamiltonian
decompositions |
| pairwiseCI | Confidence intervals for two sample comparisons |
| palaeoSig | Significance tests for palaeoenvironmental reconstructions |
| paleoMAS | Paleoecological Analysis |
| paleotree | Paleontological and Phylogenetic Analyses of Evolution |
| paleoTS | Analyze paleontological time-series |
| paloma | Poisson Approximation for LOcal Motif Assessment |
| paltran | WA, WA-PLS, MW for paleolimnology |
| pamctdp | Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns |
| pamm | Power analysis for random effects in mixed models |
| pamr | Pam: prediction analysis for microarrays |
| pan | Multiple imputation for multivariate panel or clustered data |
| panel | Panel |
| papply | Parallel apply function using MPI |
| paramlink | Parametric linkage analysis in R |
| paran | Horn's Test of Principal Components/Factors |
| parcor | Regularized estimation of partial correlation matrices |
| parfm | Parametric Frailty Models |
| parfossil | Parallelized functions for palaeoecological and
palaeogeographical analysis |
| parmigene | Parallel Mutual Information estimation for Gene Network
reconstruction |
| parser | Detailed R source code parser |
| partDSA | Partitioning using deletion, substitution, and addition moves |
| partitionMap | Partition Maps |
| partitionMetric | Compute a distance metric between two partitions of a set |
| partitions | Additive partitions of integers |
| partsm | Periodic Autoregressive Time Series Models |
| party | A Laboratory for Recursive Partytioning |
| partykit | A Toolkit for Recursive Partytioning |
| parviol | Parviol |
| pastecs | Package for Analysis of Space-Time Ecological Series |
| PASWR | PROBABILITY and STATISTICS WITH R |
| pathClass | Classification using biological pathways as prior knowledge |
| pathmox | Segmentation Trees in Partial Least Squares Path Modeling |
| PAWL | Implementation of the PAWL algorithm |
| pbapply | Adding Progress Bar to '*apply' Functions |
| pbatR | P2BAT |
| PBImisc | A set of datasets used in my classes or in the book ,,Modele
liniowe i mieszane w R, wraz z przykladami w analizie danych” |
| pbivnorm | Vectorized Bivariate Normal CDF |
| pbkrtest | Parametric bootstrap and Kenward Roger based methods for mixed
model comparison |
| PBSadmb | PBS ADMB |
| PBSddesolve | Solver for Delay Differential Equations |
| PBSmapping | Mapping Fisheries Data and Spatial Analysis Tools |
| PBSmodelling | GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations |
| pcaL1 | Three L1-Norm PCA Methods |
| pcalg | Estimation of CPDAG/PAG and causal inference using the IDA
algorithm |
| pcaPA | Parallel Analysis for ordinal and numeric data using polychoric
and Pearson correlations with S3 classes |
| pcaPP | Robust PCA by Projection Pursuit |
| pcenum | Permutations and Combinations Enumeration |
| PCICt | Implementation of POSIXct work-alike for 365 and 360 day
calendars |
| PCIT | PCIT algorithm - Partial Correlation Coefficient with
Information Theory |
| pcrcoal | A package implementing the coalescent approach to PCR simulation
developed by Weiss and von Haeseler (NAR, 1997) |
| PCS | Calculate the probability of correct selection (PCS) |
| pcse | Panel-Corrected Standard Error Estimation in R |
| pcurve | Principal curve analysis |
| pdc | Permutation Distribution Clustering |
| pdfCluster | Cluster analysis via nonparametric density estimation |
| pdist | Partitioned Distance Function |
| Peaks | Peaks |
| pear | Package for Periodic Autoregression Analysis |
| PearsonDS | Pearson Distribution System |
| PearsonICA | Independent component analysis using score functions from the
Pearson system |
| pec | Prediction Error Curves for Survival Models |
| pedantics | Functions to facilitate power and sensitivity analyses for
genetic studies of natrual popualtions |
| pedigree | Pedigree functions |
| pedigreemm | Pedigree-based mixed-effects models |
| pegas | Population and Evolutionary Genetics Analysis System |
| PEIP | Functions for Aster Book on Inverse Theory |
| penalized | L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model |
| penalizedLDA | Penalized classification using Fisher's linear discriminant |
| penalizedSVM | Feature Selection SVM using penalty functions |
| pencopula | Flexible Copula Density Estimation with Penalized Hierarchical
B-Splines |
| pendensity | Density Estimation with a Penalized Mixture Approach |
| pensim | Simulation of high-dimensional data and parallelized repeated
penalized regression |
| peperr | Parallelised Estimation of Prediction Error |
| pequod | Moderated regression package |
| PerfMeas | PerfMeas: Performance Measures for ranking and classification
tasks |
| PerformanceAnalytics | Econometric tools for performance and risk analysis |
| perm | Exact or Asymptotic permutation tests |
| PermAlgo | Permutational algorithm to simulate survival data |
| permax | permax |
| permtest | Permutation test to compare variability within and distance
between two groups |
| permute | Functions for generating restricted permutations of data |
| PERregress | Regression Functions and Datasets |
| perturb | Tools for evaluating collinearity |
| pesticides | Analysis of single serving and composite pesticide residue
measurements |
| PET | Simulation and Reconstruction of PET Images |
| pfda | Paired Functional Data Analysis |
| pgam | Poisson-Gamma Additive Models |
| pgfSweave | Quality speedy graphics compilation and caching with Sweave |
| pgirmess | Data analysis in ecology |
| pglm | panel generalized linear model |
| pGLS | Generalized Least Square in comparative Phylogenetics |
| pgmm | Parsimonious Gaussian mixture models |
| pgnorm | The p-generalized normal distribution |
| pgs | Precision of Geometric Sampling |
| phangorn | Phylogenetic analysis in R |
| PhaseType | Inference for Phase-type Distributions |
| pheatmap | Pretty Heatmaps |
| phenology | Tools to manage a parametric function that describes phenology |
| phia | Post-Hoc Interaction Analysis |
| phitest | Nonparametric goodness-of-fit methods based on phi-divergences |
| phmm | Proportional Hazards Mixed-effects Model (PHMM) |
| phom | Persistent Homology in R |
| phpSerialize | Serialize R to PHP associative array |
| phull | p-hull: a generalization of convex hull, X-Y hull and bounding
rectangle |
| PhViD | PhViD: an R package for PharmacoVigilance signal Detection |
| phybase | Basic functions for phylogenetic analysis |
| phyclust | Phylogenetic Clustering (Phyloclustering) |
| phyext | An extension of some of the classes in phylobase. Tree objects
now support subnodes on branches |
| phylobase | Base package for phylogenetic structures and comparative data |
| phyloclim | Integrating phylogenetics and climatic niche modelling |
| PHYLOGR | Functions for phylogenetically based statistical analyses |
| phylosim | R packge for simulating biological sequence evolution |
| phylotools | Phylogenetic tools for Eco-phylogenetics |
| PhysicalActivity | Process Physical Activity Accelerometer Data |
| phytools | Phylogenetic Tools for comparative biology (and other things) |
| pi0 | Estimating the proportion of true null hypotheses for FDR |
| picante | R tools for integrating phylogenies and ecology |
| PIPS | Predicted Interval Plots |
| pixmap | Bitmap Images (“Pixel Maps”) |
| PK | Basic Non-Compartmental Pharmacokinetics |
| PKfit | A Data Analysis Tool for Pharmacokinetics |
| PKgraph | Model diagnostics for population pharmacokinetic models |
| PKmodelFinder | Software for Pharmacokinetic model |
| PKPDmodels | Pharmacokinetic/pharmacodynamic models |
| PKreport | A reporting pipeline for checking population pharmacokinetic
model assumption |
| pks | Probabilistic Knowledge Structures |
| PKtools | unified computational interfaces for pop PK |
| plan | Tools for project planning |
| planar | Multilayer optics |
| playitbyr | Representing and exploring data through sound |
| playwith | A GUI for interactive plots using GTK+ |
| plgp | Particle Learning of Gaussian Processes |
| plink | IRT Separate Calibration Linking Methods |
| PLIS | Multiplicity control using Pooled LIS statisitcs |
| plm | Linear Models for Panel Data |
| plmDE | Additive partially linear models for differential gene
expression analysis |
| plotGoogleMaps | Plot SP data as HTML map mushup over Google Maps |
| plotmo | Plot a model's response while varying the values of the
predictors |
| plotpc | Plot principal component histograms around a scatter plot |
| plotrix | Various plotting functions |
| plotSEMM | Graphing nonlinear latent variable interactions in SEMM |
| PL.popN | Population Size Estimation |
| plRasch | Log Linear by Linear Asscociation models |
| pls | Partial Least Squares and Principal Component regression |
| plsdof | Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression |
| plsgenomics | PLS analyses for genomics |
| plspm | Partial Least Squares Data Analysis Methods |
| plsRbeta | Partial least squares Regression for beta regression models |
| plsRcox | Partial least squares Regression for Cox models and related
techniques |
| plsRglm | Partial least squares Regression for generalized linear models |
| plugdensity | Plug-in Kernel Density Estimation |
| plumbr | Mutable and dynamic data models |
| plus | Penalized Linear Unbiased Selection |
| plyr | Tools for splitting, applying and combining data |
| PMA | Penalized Multivariate Analysis |
| pmc | Phylogenetic Monte Carlo |
| pmclust | Parallel Model-Based Clustering |
| pmg | Poor Man's GUI |
| pmlr | Penalized Multinomial Logistic Regression |
| pmml | Generate PMML for various models |
| pmr | Probability Models for Ranking Data |
| png | Read and write PNG images |
| poibin | The Poisson Binomial Distribution |
| PoiClaClu | Classification and clustering of sequencing data based on a
Poisson model |
| poilog | Poisson lognormal and bivariate Poisson lognormal distribution |
| PoissonSeq | Significance analysis of sequencing data based on a Poisson log
linear model |
| poistweedie | Poisson-Tweedie exponential family models |
| poLCA | Polytomous variable Latent Class Analysis |
| polspline | Polynomial spline routines |
| polyapost | Simulating from the Polya posterior |
| polycor | Polychoric and Polyserial Correlations |
| polydect | polydect |
| polynom | A collection of functions to implement a class for univariate
polynomial manipulations |
| PolynomF | Polynomials in R |
| polyphemus | Genome wide analysis of RNA Polymerase II-based ChIP Seq data |
| polysat | Tools for Polyploid Microsatellite Analysis |
| polySegratio | Simulate and test marker dosage for dominant markers in
autopolyploids |
| polySegratioMM | Bayesian mixture models for marker dosage in autopolyploids |
| polytomous | Polytomous logistic regression for fixed and mixed effects |
| polywog | Bootstrapped Basis Regression with Oracle Model Selection |
| Pomic | Pattern Oriented Modelling Information Criterion |
| PoMoS | Polynomial (ordinary differential equation) Model Search |
| pomp | Statistical inference for partially observed Markov processes |
| pooh | Partial Orders and Relations |
| popbio | Construction and analysis of matrix population models |
| popdemo | Provides Tools For Demographic Modelling Using Projection
Matrices |
| popgen | Statistical and Population Genetics |
| PopGenKit | Useful functions for (batch) file conversion and data resampling
in microsatellite datasets |
| PopGenome | Population genetic analysis |
| popPK | Summary of Population Pharmacokinetic Analysis |
| portes | Portmanteau Tests for Time Series Models |
| portfolio | Analysing equity portfolios |
| portfolioSim | Framework for simulating equity portfolio strategies |
| postCP | A package to estimate posterior probabilities in change-point
models using constrained HMM |
| POT | Generalized Pareto Distribution and Peaks Over Threshold |
| potts | Markov Chain Monte Carlo for Potts Models |
| PottsUtils | Utility Functions of the Potts Models |
| powell | Powell's UObyQA algorithm |
| powerGWASinteraction | Power Calculations for Interactions for GWAS |
| powerMediation | Power/Sample size calculation for mediation analysis |
| powerpkg | Power analyses for the affected sib pair and the TDT design |
| powerSurvEpi | Power and sample size calculation for survival analysis of
epidemiological studies |
| PowerTOST | Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies |
| PP | Person Parameter estimation |
| ppcor | Partial and Semi-partial (Part) correlation |
| ppiPre | Predict protein-protein interactions based on functional and
topological similarities |
| ppls | Penalized Partial Least Squares |
| ppMeasures | Point pattern distances and prototypes |
| pps | Functions for PPS sampling |
| ppstat | Point Process Statistics |
| prabclus | Functions for clustering of presence-absence, abundance and
multilocus genetic data |
| pracma | Practical Numerical Math Functions |
| pragma | Provides a pragma / directive / keyword syntax for R |
| PrecipStat | Precipitation Statistics |
| predbayescor | Classification rule based on Bayesian naive Bayes models with
feature selection bias corrected |
| PredictABEL | Assessment of risk prediction models |
| PredictiveRegression | Prediction Intervals for Three Basic Statistical Models |
| predmixcor | Classification rule based on Bayesian mixture models with
feature selection bias corrected |
| prefmod | Utilities to fit paired comparison models for preferences |
| PresenceAbsence | Presence-Absence Model Evaluation |
| prettyR | Pretty descriptive stats |
| prim | Patient Rule Induction Method (PRIM) |
| primer | Functions and data for A Primer of Ecology with R |
| princurve | Fits a Principal Curve in Arbitrary Dimension |
| PrivateLR | Differentially private regularized logistic regression |
| prLogistic | Estimation of Prevalence Ratios using Logistic Models |
| prob | Elementary Probability on Finite Sample Spaces |
| probemapper | Connects to QBRC's ProbeMapper platform |
| ProbForecastGOP | Probabilistic weather forecast using the GOP method |
| pROC | display and analyze ROC curves |
| processdata | Process Data |
| ProDenICA | Product Density Estimation for ICA using tilted Gaussian density
estimates |
| prodlim | Product Limit Estimation for event history and survival analysis |
| productplots | NA |
| profdpm | Profile Dirichlet Process Mixtures |
| ProfessR | Grades Setting and Exam Maker |
| ProfileLikelihood | Profile Likelihood for a Parameter in Commonly Used Statistical
Models |
| profileModel | Tools for profiling inference functions for various model
classes |
| profr | An alternative display for profiling information |
| proftools | Profile Output Processing Tools for R |
| proj4 | A simple interface to the PROJ.4 cartographic projections
library |
| ProjectTemplate | Automates the creation of new statistical analysis projects |
| PropCIs | Various confidence interval methods for proportions |
| proptest | Tests of the Proportional Hazards Assumption |
| proto | Prototype object-based programming |
| protoclust | Hierarchical clustering with prototypes |
| proxy | Distance and Similarity Measures |
| PSAgraphics | Propensity Score Analysis Graphics |
| PSCBS | Analysis of Parent-Specific DNA Copy Numbers |
| pscl | Political Science Computational Laboratory, Stanford University |
| PSCN | Parent Specific DNA Copy Number Estimation |
| pseudo | Pseudo - observations |
| psgp | Projected Spatial Gaussian Process (psgp) methods |
| PSM | Non-Linear Mixed-Effects modelling using Stochastic Differential
Equations |
| pso | Particle Swarm Optimization |
| pspearman | Spearman's rank correlation test |
| pspline | Penalized Smoothing Splines |
| psy | Various procedures used in psychometry |
| psych | Procedures for Psychological, Psychometric, and Personality
Research |
| psychometric | Applied Psychometric Theory |
| psychomix | Psychometric Mixture Models |
| psychotools | Infrastructure for Psychometric Modeling |
| psychotree | Recursive Partitioning Based on Psychometric Models |
| psyphy | Functions for analyzing psychophysical data in R |
| PTAk | Principal Tensor Analysis on k modes |
| ptinpoly | Point-In-Polyhedron Test (2D and 3D) |
| PtProcess | Time Dependent Point Process Modelling |
| ptw | Parametric Time Warping |
| pvclass | P-values for Classification |
| pvclust | Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling |
| pwr | Basic functions for power analysis |
| PwrGSD | Power in a Group Sequential Design |
| pwt | Penn World Table |
| pxR | PC-Axis with R |
| pycno | Pycnophylactic Interpolation |
| pyramid | Functions to draw population pyramid |
|
| qAnalyst | Control Charts, Capability and Distribution Identification |
| qat | Quality Assurance Toolkit |
| QCA | Qualitative Comparative Analysis |
| QCA3 | Yet another package for Qualitative Comparative Analysis |
| QCAGUI | QCA Graphical User Interface |
| qcc | Quality Control Charts |
| qgraph | Network representations of relationships in data |
| qLearn | Estimation and inference for Q-learning |
| qlspack | Quasi Least Square Package |
| QLSpline | QLSpline |
| qmap | Quantile-mapping for post-processing climate model output |
| qmrparser | Parser combinator in R |
| qp | q-order partial correlation graph search algorithm |
| qpcR | Modelling and analysis of real-time PCR data |
| qPCR.CT | qPCR data analysis and plot package |
| qqplotter | Quantile-quantile analysis of 24-hr precipitation using a frame
work based on the exponential distribution |
| qrfactor | Simultaneous simulation of Q and R mode factor analyses |
| QRM | Provides R-language code to examine Quantitative Risk Management
concepts |
| qrnn | Quantile regression neural network |
| QSARdata | Quantitative Structure Activity Relationship (QSAR) Data Sets |
| QT | QT Knowledge Management System |
| qtbase | Interface between R and Qt |
| qtl | Tools for analyzing QTL experiments |
| qtlbim | QTL Bayesian Interval Mapping |
| qtlbook | Datasets for the R/qtl book |
| qtlDesign | Design of QTL experiments |
| qtlmt | Tools for mapping multiple complex traits |
| QTLNetworkR | Interactive software package for QTL visualization |
| QTLRel | Tools for mapping of quantitative traits of genetically related
individuals and calculating identity coefficients from a
pedigree |
| qtpaint | Qt-based painting infrastructure |
| qtutils | Miscellaneous Qt-based utilities |
| QuACN | QuACN: Quantitative Analysis of Complex Networks |
| quadprog | Functions to solve Quadratic Programming Problems |
| qualityTools | Statistical Methods for Quality Science |
| qualV | Qualitative Validation Methods |
| quantchem | Quantitative chemical analysis: calibration and evaluation of
results |
| quantmod | Quantitative Financial Modelling Framework |
| QuantPsyc | Quantitative Psychology Tools |
| quantreg | Quantile Regression |
| quantregForest | Quantile Regression Forests |
| quantspec | Quantile-based Spectral Analysis of Time Series |
| QuasiSeq | QuasiSeq |
| quaternions | Arithmetics and linear algebra with Quaternions |
| queueing | Basic Markovian queueing models |
| QUIC | Regularized sparse inverse covariance matrix estimation |
| qvcalc | Quasi variances for factor effects in statistical models |
|
| R1magic | Compressive Sampling: Sparse signal recovery utilities |
| R2admb | ADMB to R interface functions |
| R2BayesX | Estimate Structured Additive Regression Models with BayesX |
| R2Cuba | Multidimensional Numerical Integration |
| r2dRue | 2d Rain Use Efficience model |
| R2G2 | Converting R CRAN outputs into Google Earth |
| R2HTML | HTML exportation for R objects |
| R2jags | A Package for Running jags from R |
| r2lh | R to LaTeX and HTML |
| R2OpenBUGS | Running OpenBUGS from R |
| R2PPT | Simple R Interface to Microsoft PowerPoint using rcom or
RDCOMClient |
| R2STATS | A GTK GUI for fitting and comparing GLM and GLMM in R |
| R2SWF | Convert R Graphics to Flash Animations |
| R2wd | Write MS-Word documents from R |
| R2WinBUGS | Running WinBUGS and OpenBUGS from R / S-PLUS |
| R4dfp | 4dfp MRI Image Read and Write Routines |
| r4ss | R code for Stock Synthesis |
| race | Racing methods for the selection of the best |
| RAD | Fit RAD models to biological data |
| RadioSonde | Tools for plotting skew-T diagrams and wind profiles |
| RAFM | Admixture F-model |
| rainbow | Rainbow plots, bagplots and boxplots for functional data |
| rake | Normalize sample weights using marginal total population
weights |
| ramps | Bayesian Geostatistical Modeling with RAMPS |
| randaes | Random number generator based on AES cipher |
| RandForestGUI | RandForestGUI |
| random | True random numbers using random.org |
| RandomFields | Simulation and Analysis of Random Fields |
| randomForest | Breiman and Cutler's random forests for classification and
regression |
| randomLCA | Random Effects Latent Class Analysis |
| randomNames | Random name generating function and data set |
| random.polychor.pa | A Parallel Analysis With Polychoric Correlation Matrices |
| randomSurvivalForest | Random Survival Forests |
| randtoolbox | toolbox for pseudo and quasi random number generation and RNG
tests |
| RandVar | Implementation of random variables |
| rangeMapper | A platform for the study of macroecology of life history traits |
| RankAggreg | Weighted rank aggregation |
| rankhazard | Rank-hazard plots |
| RANN | Fast Nearest Neighbour Search |
| rapport | A report templating system |
| RArcInfo | Functions to import data from Arc/Info V7.x binary coverages |
| RaschSampler | Rasch Sampler |
| rasclass | Supervised Raster Image Classification |
| Rassoc | Robust tests for case-control genetic association studies |
| raster | Geographic analysis and modeling with raster data |
| rasterVis | Visualization methods for the raster package |
| rateratio.test | Exact rate ratio test |
| Ratings | Model-based Ratings Figures |
| rationalfun | Manipulation of Rational Functions |
| RAtmosphere | Standard Atmosperic profiles |
| rattle | Graphical user interface for data mining in R |
| rAverage | Parameter estimation for the Averaging model of Information
Integration Theory |
| rbamtools | Reading, manipulation and writing BAM (Binary alignment) files |
| rbenchmark | Benchmarking routine for R |
| RBerkeley | R API to Oracle Berkeley DB |
| rBeta2009 | The Beta Random Number and Dirichlet Random Vector Generating
Functions |
| rbounds | Perform Rosenbaum bounds sensitivity tests for matched and
unmatched data |
| rbugs | Fusing R and OpenBugs |
| RC | Reproducible Computing |
| R.cache | Fast and light-weight caching (memoization) of objects |
| RCALI | Calculation of the Integrated Flow of Particles between Polygons |
| Rcapture | Loglinear Models for Capture-Recapture Experiments |
| RCassandra | R/Cassandra interface |
| rcdd | rcdd (Computational Geometry) |
| rcdk | rcdk - Interface to the CDK Libraries |
| rcdklibs | rcdklib - CDK libraries packaged for R |
| Rcell | Microscopy Based Cytometry Data Analysis Package |
| Rcgmin | Conjugate gradient minimization of nonlinear functions with box
constraints |
| rChoiceDialogs | rChoiceDialogs collection |
| Rclusterpp | Linkable C++ clustering |
| Rcmdr | R Commander |
| RcmdrPlugin.BCA | Rcmdr Plug-In for Business and Customer Analytics |
| RcmdrPlugin.coin | Rcmdr Coin Plug-In |
| RcmdrPlugin.depthTools | R commander Depth Tools Plug-In |
| RcmdrPlugin.doBy | Rcmdr doBy Plug-In |
| RcmdrPlugin.DoE | R Commander Plugin for (industrial) Design of Experiments |
| RcmdrPlugin.doex | Rcmdr plugin for Stat 4309 course |
| RcmdrPlugin.EBM | Rcmdr Evidence Based Medicine Plug-In package |
| RcmdrPlugin.EHESsampling | Tools for sampling in European Health Examination Surveys (EHES) |
| RcmdrPlugin.epack | Rcmdr plugin for time series |
| RcmdrPlugin.Export | Graphically export output to LaTeX or HTML |
| RcmdrPlugin.FactoMineR | Graphical User Interface for FactoMineR |
| RcmdrPlugin.HH | Rcmdr support for the HH package |
| RcmdrPlugin.IPSUR | An IPSUR Plugin for the R Commander |
| RcmdrPlugin.KMggplot2 | Rcmdr Plug-In for Kaplan-Meier Plot and Other Plots by Using the
ggplot2 Package |
| RcmdrPlugin.MAc | Meta-Analysis with Correlations (MAc) Rcmdr Plug-in |
| RcmdrPlugin.MAd | Meta-Analysis with Mean Differences (MAd) Rcmdr Plug-in |
| RcmdrPlugin.mosaic | Adds menu items to produce mosaic plots and assoc plots to Rcmdr |
| RcmdrPlugin.orloca | orloca Rcmdr Plug-in |
| RcmdrPlugin.pointG | Rcmdr Graphical POINT of view for questionnaire data Plug-In |
| RcmdrPlugin.PT | Some discrete exponential dispersion models: Poisson-Tweedie |
| RcmdrPlugin.qcc | Rcmdr qcc Plug-In |
| RcmdrPlugin.qual | Rcmdr plugin for quality control course |
| RcmdrPlugin.SCDA | Rcmdr plugin for designing and analyzing single-case experiments |
| RcmdrPlugin.SensoMineR | Graphical User Interface for SensoMineR |
| RcmdrPlugin.SLC | SLC Rcmdr Plug-in |
| RcmdrPlugin.sos | Efficiently search R Help pages |
| RcmdrPlugin.steepness | Steepness Rcmdr Plug-in |
| RcmdrPlugin.survival | R Commander Plug-in for the survival Package |
| RcmdrPlugin.SurvivalT | Rcmdr Survival Plug-In |
| RcmdrPlugin.TeachingDemos | Rcmdr Teaching Demos Plug-In |
| RcmdrPlugin.TextMining | Rcommander plugin for "tm" package |
| RcmdrPlugin.UCA | UCA Rcmdr Plug-in |
| RColorBrewer | ColorBrewer palettes |
| rcom | R COM Client Interface and internal COM Server |
| rconifers | R interface to the CONIFERS forest growth model |
| Rcplex | R interface to CPLEX |
| Rcpp | Seamless R and C++ Integration |
| RcppArmadillo | Rcpp integration for Armadillo templated linear algebra library |
| RcppBDT | Rcpp bindings for the Boost Date_Time library |
| rcppbugs | R binding for cppbugs |
| RcppClassic | Deprecated 'classic' Rcpp API |
| RcppDE | Global optimization by differential evolution in C++ |
| RcppEigen | Rcpp integration for the Eigen templated linear algebra library |
| RcppExamples | Examples using Rcpp to interface R and C++ |
| RcppGSL | Rcpp integration for GNU GSL vectors and matrices |
| RcppSMC | Rcpp bindings for Sequential Monte Carlo |
| Rcsdp | R interface to the CSDP semidefinite programming library |
| rCUR | CUR decomposition package |
| RCurl | General network (HTTP/FTP/...) client interface for R |
| Rd2roxygen | Convert Rd to roxygen documentation and utilities to improve
documentation |
| rda | Shrunken Centroids Regularized Discriminant Analysis |
| rdatamarket | Data access API for DataMarket.com |
| rdetools | Relevant Dimension Estimation (RDE) in Feature Spaces |
| R.devices | Enhanced methods for handling graphical devices |
| RDF | RDF reading and writing |
| RDieHarder | R interface to the dieharder RNG test suite |
| Rdistance | Distance sampling analyses |
| rDNA | R Bindings for the Discourse Network Analyzer |
| Rdrools | A rules engine for R based on Drools |
| Rdroolsjars | Rdrools jars |
| rdryad | Dryad API interface |
| RDS | R Functions for Respondent-Driven Sampling |
| Rdsm | Threads Environment for R |
| rdyncall | Improved Foreign Function Interface (FFI) and Dynamic Bindings
to C Libraries (e.g. OpenGL) |
| ReacTran | Reactive transport modelling in 1D, 2D and 3D |
| readbitmap | Read bitmap images (BMP,JPEG,PNG) without external dependencies |
| readBrukerFlexData | Reads mass spectrometry data in Bruker *flex format |
| ReadImages | Image Reading Module for R |
| Read.isi | Automated access to old World Fertility Survey data saved in
fixed-width format based on ISI-formatted codebooks |
| readMLData | Reading machine learning benchmark data sets from different
sources in their original format |
| readMzXmlData | Reads mass spectrometry data in mzXML format |
| realized | Realized |
| reams | Resampling-Based Adaptive Model Selection |
| Rearrangement | Monotonize point and interval functional estimates by
rearrangement |
| rebmix | The Rebmix Package |
| ReCiPa | Redundancy Control in Pathways databases |
| recommenderlab | Lab for Developing and Testing Recommender Algorithms |
| recommenderlabBX | Book-Crossing Dataset (BX) for recommenderlab |
| recommenderlabJester | Jester Dataset for recommenderlab |
| RecordLinkage | Record Linkage in R |
| Records | Record Values and Record Times |
| REEMtree | Regression Trees with Random Effects for Longitudinal (Panel)
Data |
| ref | References for R |
| refund | Regression with Functional Data |
| REGENT | REGENT: Risk Estimation for Genetic and Environmental Traits |
| registry | Registry infrastructure |
| reglogit | Simulation-based Regularized Logistic Regression |
| regress | Gaussian linear models with linear covariance structure |
| regsubseq | Detect and Test Regular Sequences and Subsequences |
| regtest | Regression testing |
| rehh | Searching for footprints of selection using Haplotype
Homozygosity based tests |
| rela | Item Analysis Package with Standard Errors |
| relaimpo | Relative importance of regressors in linear models |
| relations | Data Structures and Algorithms for Relations |
| RelativeRisk | Relative Risk |
| relax | relax – R Editor for Literate Analysis and lateX |
| relaxo | Relaxed Lasso |
| reldist | Relative Distribution Methods |
| relevent | Relational Event Models |
| Reliability | Functions for estimating parameters in software reliability
models |
| reliaR | Package for some probability distributions |
| relimp | Relative Contribution of Effects in a Regression Model |
| relSim | Relative Simulator |
| relsurv | Relative survival |
| remix | Remix your data |
| rEMM | Extensible Markov Model (EMM) for Data Stream Clustering in R |
| remMap | Regularized Multivariate Regression for Identifying Master
Predictors |
| Renext | Renewal method for extreme values extrapolation |
| RenextGUI | GUI for Renext |
| RepeatedHighDim | Detection of global group effect in microarrays data |
| replicationDemos | Agnotology |
| repolr | Repeated measures proportional odds logistic regression |
| reportr | A general message and error reporting system |
| reporttools | Generate LaTeX tables of descriptive statistics |
| represent | Determine the representativity of two multidimensional data sets |
| REQS | R/EQS Interface |
| ResearchMethods | Using GUIs to help teach statistics to non-statistics students |
| reshape | Flexibly reshape data |
| reshape2 | Flexibly reshape data: a reboot of the reshape package |
| reshapeGUI | A GUI for the reshape2 and plyr packages |
| ResistorArray | electrical properties of resistor networks |
| ResourceSelection | Resource Selection (Probability) Functions for Use-Availability
Data |
| review | Manage Review Logs |
| reweight | Adjustment of Survey Respondent Weights |
| RExcelInstaller | Integration of R and Excel, (use R in Excel, read/write XLS
files) |
| RFA | Regional Frequency Analysis |
| rFerns | Random ferns classifier |
| R.filesets | Easy handling of and access to files organized in structured
directories |
| RFinanceYJ | RFinanceYJ |
| rfishbase | R Interface to FishBASE |
| Rfit | Rank Estimation for Linear Models |
| RFLPtools | Tools to analyse RFLP data |
| RfmriVC | Varying stimulus coefficient fMRI models in R |
| RFOC | Graphics for Spherical Distributions and Earthquake Focal
Mechanisms |
| RForcecom | RForcecom provides the connection to Force.com (Salesforce.com)
from R |
| rfPermute | Estimate permutation p-values for importance metrics |
| Rfun | Funy application of R |
| rgam | Robust Generalized Additive Model |
| rgbif | Interface to the Global Biodiversity Information Facility API
methods |
| RGCCA | Regularized Generalized Canonical Correlation Analysis |
| rgcvpack | R Interface for GCVPACK Fortran Package |
| rgdal | Bindings for the Geospatial Data Abstraction Library |
| rgenoud | R version of GENetic Optimization Using Derivatives |
| rgeos | Interface to Geometry Engine - Open Source (GEOS) |
| rggobi | Interface between R and GGobi |
| RghcnV3 | Global Historical Climate Network Version 3 |
| RGIFT | Create quizzes in GIFT Format |
| rgl | 3D visualization device system (OpenGL) |
| Rglpk | R/GNU Linear Programming Kit Interface |
| RgoogleMaps | Overlays on Google map tiles in R |
| rgp | R genetic programming framework |
| rgr | The GSC Applied Geochemistry EDA Package |
| RGraphics | Data and Functions from the book R Graphics, Second Edition |
| rgrs | Functions to make R usage in social sciences easier (in french) |
| RGtk2 | R bindings for Gtk 2.8.0 and above |
| RGtk2Extras | Data frame editor and dialog making wrapper for RGtk2 |
| RH2 | DBI/RJDBC interface to h2 Database |
| Rhh | Calculating multilocus heterozygosity and
heterozygosity-heterozygosity correlation |
| RHive | R and Hive |
| RHmm | Hidden Markov Models simulations and estimations |
| rhosp | Side effect risks in hospital : simulation and estimation |
| RHRV | Heart rate variability analysis of ECG data |
| RHT | Regularized Hotelling's T-square Test for Pathway (Gene Set)
Analysis |
| R.huge | Methods for accessing huge amounts of data [DEPRECATED] |
| ri | ri: R package for performing randomization-based inference for
experiments |
| rich | Computes and compares species richnesses |
| richards | Richards curves |
| RiDMC | R interface to the idmclib library |
| Rigroup | Rigroup: Provides small integer group functions |
| rindex | Indexing for R |
| ringscale | Ringscale |
| RInside | C++ classes to embed R in C++ applications |
| rioja | Analysis of Quaternary Science Data |
| risaac | A fast cryptographic random number generator using ISAAC by
Robert Jenkins |
| riskRegression | Risk regression for survival analysis |
| risksetROC | Riskset ROC curve estimation from censored survival data |
| RISmed | Download content from NCBI databases |
| RItools | Randomization inference tools |
| riv | Robust instrumental variables estimator |
| RJaCGH | Reversible Jump MCMC for the analysis of CGH arrays |
| rjags | Bayesian graphical models using MCMC |
| rJava | Low-level R to Java interface |
| rJavax | rJava extensions |
| RJDBC | Provides access to databases through the JDBC interface |
| rje | Miscellaneous useful functions |
| Rjms | R messaging using ActiveMQ and jms |
| Rjmsjars | Rjms jars |
| rJPSGCS | R-interface to gene drop Java Programs for Statistical Genetics
and Computational Statistics (JPSGCS) |
| rjson | JSON for R |
| RJSONIO | Serialize R objects to JSON, JavaScript Object Notation |
| rJython | R interface to Python via Jython |
| RKEA | R/KEA interface |
| rknn | Random KNN Classification and Regression |
| Rknots | Rknots |
| Rlab | Functions and Datasets Required for ST370 class |
| Rlabkey | Data exchange between R and LabKey Server |
| RLadyBug | Analysis of Infectious Diseases using Stochastic Epidemic Models |
| RLastFM | R interface to last.fm API |
| rlecuyer | R interface to RNG with multiple streams |
| Rlof | R parallel implementation of Local Outlier Factor(LOF) |
| RLRsim | Exact (Restricted) Likelihood Ratio tests for mixed and additive
models |
| RM2 | Revenue Management and Pricing Package |
| rmac | calculate RMAC or FMAC agreement coefficients |
| RMallow | Fit Multi-Modal Mallows' Models to ranking data |
| Rmalschains | Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R |
| RMark | R Code for MARK Analysis |
| R.matlab | Read and write of MAT files together with R-to-Matlab
connectivity |
| RMAWGEN | RMAWGEN (R Multi-site Auto-regressive Weather GENerator): a
package to generate daily time series from monthly mean values |
| RMC | Functions for fitting Markov models |
| RMediation | An R Package for Mediation Analysis Confidence Intervals |
| RMendeley | Interface to Mendeley API methods |
| rmeta | Meta-analysis |
| R.methodsS3 | Utility function for defining S3 methods |
| rminer | Simpler use of data mining methods (e.g. NN and SVM) in
classification and regression |
| Rmisc | Rmisc: Ryan Miscellaneous |
| Rmixmod | An interface of MIXMOD |
| RMongo | MongoDB Client for R |
| rmongodb | R-MongoDB driver |
| Rmosek | The R-to-MOSEK Optimization Interface |
| Rmpfr | R MPFR - Multiple Precision Floating-Point Reliable |
| Rmpi | Interface (Wrapper) to MPI (Message-Passing Interface) |
| rms | Regression Modeling Strategies |
| RMTstat | Distributions, Statistics and Tests derived from Random Matrix
Theory |
| RMySQL | R interface to the MySQL database |
| RnavGraph | Using graphs as a navigational infrastructure |
| RnavGraphImageData | Some image data used in the RnavGraph package demos |
| RNCBI | The java ncbi interface to R |
| RNCBIAxis2Libs | Axis2 libraries for use in the R environment |
| RNCBIEUtilsLibs | EUtils libraries for use in the R environment |
| RNCEP | Obtain, organize, and visualize NCEP weather data |
| rneos | rneos: XML-RPC Interface to NEOS |
| RNetCDF | R Interface to NetCDF Datasets |
| RNetLogo | Provides an interface to the agent-based modelling plattform
NetLogo |
| rngSetSeed | Initialization of the R base random number generator
Mersenne-Twister with a vector of an arbitrary length |
| rngWELL | toolbox for WELL random number generators |
| rngwell19937 | WELL19937a random number generator implemented with 53 bit
output |
| Rniftilib | Rniftilib - R Interface to NIFTICLIB (V2.0.0: 2010-07-20) |
| RNiftyReg | Medical image registration using the NiftyReg library |
| ROAuth | R interface for OAuth |
| RobAStBase | Robust Asymptotic Statistics |
| robCompositions | Robust Estimation for Compositional Data |
| robeth | R functions for robust statistics |
| robfilter | Robust Time Series Filters |
| RobLox | Optimally robust influence curves and estimators for location
and scale |
| RobLoxBioC | Infinitesimally robust estimators for preprocessing omics data |
| RobRex | Optimally robust influence curves for regression and scale |
| robust | Insightful Robust Library |
| RobustAFT | Truncated Maximum Likelihood fit and Robust Accelerated Failure
Time regression for Gaussian and logWeibull case |
| robustbase | Basic Robust Statistics |
| robustfa | An Object Oriented Framework for Robust Factor Analysis |
| robustHD | Robust methods for high-dimensional data |
| RobustRankAggreg | Methods for robust rank aggregation |
| robustreg | Robust Regression Functions |
| robustX | eXperimental eXtraneous eXtraordinary ... Functionality for
Robust Statistics |
| rocc | ROC based classification |
| rockchalk | Regression Estimation and Presentation |
| rococo | RObust rank COrrelation COefficient and test |
| rocplus | ROC, Precision-Recall, Convex Hull and other plots |
| ROCR | Visualizing the performance of scoring classifiers |
| ROCwoGS | Non-parametric estimation of ROC curves without Gold Standard
Test |
| RODBC | ODBC Database Access |
| RODM | R interface to Oracle Data Mining |
| ROI | R Optimization Infrastructure |
| ROI.plugin.glpk | ROI-plugin GLPK |
| ROI.plugin.quadprog | ROI-plugin quadprog |
| ROI.plugin.symphony | ROI-plugin symphony |
| rolasized | Solarized colours in R |
| R.oo | R object-oriented programming with or without references |
| Rook | Rook - a web server interface for R |
| rootSolve | Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations |
| ROptEst | Optimally robust estimation |
| ROptEstOld | Optimally robust estimation - old version |
| ROptRegTS | Optimally robust estimation for regression-type models |
| ror | Robust Ordinal Regression MCDA library |
| ROracle | OCI based Oracle database interface for R |
| roxygen | Literate Programming in R |
| roxygen2 | In-source documentation for R |
| Rpad | Workbook-style, web-based interface to R |
| rpanel | Simple Interactive Controls for R Using the tcltk Package |
| rpart | Recursive Partitioning |
| rpartOrdinal | Ordinal classification tree functions |
| rpart.plot | Plot rpart models. An enhanced version of plot.rpart |
| rpartScore | Classification trees for ordinal responses |
| RpgSQL | DBI/RJDBC interface to PostgreSQL Database |
| rphast | R interface to PHAST software for comparative genomics |
| rplos | Interface to PLoS Journals API methods |
| rplotengine | R as a plotting engine |
| RPMG | Graphical User Interface (GUI) for interactive R analysis
sessions |
| RPMM | Recursively Partitioned Mixture Model |
| rPorta | R/PORTA interface |
| rportfolios | Random portfolio generation |
| RPostgreSQL | R interface to the PostgreSQL database system |
| RProtoBuf | R Interface to the Protocol Buffers API |
| rpsychi | Statistics for psychiatric research |
| rpubchem | rpubchem - Interface to the PubChem Collection |
| rpud | R functions for computation on GPU |
| RPyGeo | ArcGIS Geoprocessing in R via Python |
| RQDA | R-based Qualitative Data Analysis |
| rqmcmb2 | Markov Chain Marginal Bootstrap for Quantile Regression |
| Rquake | Seismic Hypocenter Determination |
| RQuantLib | R interface to the QuantLib library |
| Rramas | Matrix population models |
| rrBLUP | Ridge regression and other kernels for genomic selection |
| rrBlupMethod6 | Re-parametrization of RR-BLUP to allow for a fixed residual
variance |
| rrcov | Scalable Robust Estimators with High Breakdown Point |
| rrcovNA | Scalable Robust Estimators with High Breakdown Point for
Incomplete Data |
| rrdf | rrdf - support for the Resource Description Framework |
| rrdflibs | rrdflibs - package with Jena and Apache HTTP libraries for use
with rrdf |
| rredis | Redis client for R |
| rreval | Remote R Evaluator (rreval) |
| RRF | Regularized Random Forest |
| rrlda | Robust Regularized Linear Discriminant Analysis |
| rrp | Random Recursive Partitioning |
| R.rsp | Dynamic generation of scientific reports |
| rrules | Generic rule engine for R |
| rrv | Random Return Variables |
| rsae | Robust Small Area Estimation |
| RSAGA | SAGA Geoprocessing and Terrain Analysis in R |
| RScaLAPACK | A seamless interface to perform parallel computation on linear
algebra problems using the ScaLAPACK library |
| rscproxy | statconn: provides portable C-style interface to R
(StatConnector) |
| rsdepth | Ray Shooting Depth (i.e. RS Depth) functions for bivariate
analysis |
| RSearchYJ | RSearchYJ |
| RSeed | borenstein analysis |
| rseedcalc | Estimation of Proportion of GM Stacked Seeds in Seed Lots |
| RSEIS | Seismic Time Series Analysis Tools |
| rsem | Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables |
| Rserve | Binary R server |
| rSFA | Slow Feature Analysis in R |
| rsgcc | Gini methodology-based correlation and clustering analysis of
both microarray and RNA-Seq gene expression data |
| Rsge | Interface to the SGE Queuing System |
| RSiena | Siena - Simulation Investigation for Empirical Network Analysis |
| RSiteSearch | RSiteSearch |
| RSKC | Robust sparse K-means |
| rsm | Response-surface analysis |
| RSNNS | Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS) |
| RSofia | Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R |
| Rsolnp | General Non-linear Optimization |
| rsprng | R interface to SPRNG (Scalable Parallel Random Number
Generators) |
| RSQLite | SQLite interface for R |
| RSQLite.extfuns | Math and String Extension Functions for RSQLite |
| Rssa | A collection of methods for singular spectrum analysis |
| rstiefel | Random orthonormal matrix generation on the Stiefel manifold |
| rstream | Streams of random numbers |
| Rsundials | Suite of Nonlinear Differential Algebraic Equations Solvers in R |
| RSurvey | Analysis of Spatially Distributed Data |
| RSvgDevice | An R SVG graphics device |
| RSVGTipsDevice | An R SVG graphics device with dynamic tips and hyperlinks |
| Rsymphony | Symphony in R |
| rSymPy | R interface to SymPy computer algebra system |
| rtape | Manage and manipulate large collections of R objects stored as
tape-like files |
| RTAQ | RTAQ: Tools for the analysis of trades and quotes in R |
| RTDAmeritrade | RTDAmeritrade |
| RTextTools | Automatic Text Classification via Supervised Learning |
| rtf | Rich Text Format (RTF) Output |
| rtfbs | R Transcription Factor Binding Site identification tool |
| RthroughExcelWorkbooksInstaller | Excel Workbooks supporting Statistics courses using 'R through
Excel' |
| rtiff | A tiff reader for R |
| RTisean | R interface to Tisean algorithms |
| rTOFsPRO | Time-of-flight mass spectra signal processing |
| RTOMO | Visualization for seismic tomography |
| rtv | Random Time Variables |
| rugarch | Univariate GARCH models |
| RUnit | R Unit test framework |
| Runiversal | Runiversal - Package for converting R objects to Java variables
and XML |
| runjags | Interface utilities for JAGS (using BUGS syntax) and Apple Xgrid
distributed computing clusters |
| Runuran | R interface to the UNU.RAN random variate generators |
| RunuranGUI | A GUI for the UNU.RAN random variate generators |
| R.utils | Various programming utilities |
| rv | Simulation-based random variable object class in R |
| RVAideMemoire | Diverse basic statistical and graphical functions |
| Rvelslant | Downhole Seismic Analysis in R |
| rvgtest | Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators |
| rvmbinary | RVM-Classification and Regression |
| Rvmmin | Variable metric nonlinear function minimization with bounds
constraints |
| RVowpalWabbit | R interface to the Vowpal Wabbit |
| Rwave | Time-Frequency analysis of 1-D signals |
| RWeather | R wrapper around the Yahoo! Weather, Google Weather and NOAA
APIs |
| RWebMA | RWebMA |
| RWeka | R/Weka interface |
| RWekajars | R/Weka interface jars |
| RWinEdt | R-WinEdt |
| Rwinsteps | Running Winsteps in R |
| rwm | R Workspace Management |
| rWMBAT | The William and Mary Bayesian Analysis Tool |
| rworldmap | For mapping global data : rworldmap |
| rwt | Rice Wavelet Toolbox wrapper |
| RxCEcolInf | R x C Ecological Inference With Optional Incorporation of Survey
Information |
| RXKCD | Get XKCD comic from R |
| RXMCDA | RXMCDA |
| RXshrink | Maximum Likelihood Shrinkage via Generalized Ridge or Least
Angle Regression |
| Ryacas | R interface to the yacas computer algebra system |
| rysgran | Grain size analysis, textural classifications and distribution
of unconsolidated sediments |
| Rz | GUI Tool for Data Management like SPSS or Stata |
| rzmq | R binding for zmq (http://www.zeromq.org/) |
|
| s20x | Stats 20x |
| s3x | Enhanced S3 Programming |
| s4vd | Biclustering via sparse singular value decomposition
incorporating stability selection |
| sabreR | Multivariate Generalized Linear Mixed Models |
| sac | Semiparametric Analysis of Changepoint |
| saemix | Stochastic Approximation Expectation Maximization (SAEM)
algorithm |
| SAFD | Statistical Analysis of Fuzzy Data |
| safeBinaryRegression | Safe Binary Regression |
| sampfling | Sampford sampling (w/o replacement and unequal probabilities) |
| SamplerCompare | A framework for comparing the performance of MCMC samplers |
| sampleSelection | Sample Selection Models |
| samplesize | a collection of sample size functions |
| SampleSizeMeans | Sample size calculations for normal means |
| SampleSizeProportions | Calculating sample size requirements when estimating the
difference between two binomial proportions |
| sampling | Survey Sampling |
| samplingbook | Survey Sampling Procedures |
| SamplingStrata | Optimal stratification of sampling frames for multipurpose
sampling surveys |
| sampSurf | Sampling Surface Simulation for Areal Sampling Methods |
| samr | SAM: Significance Analysis of Microarrays |
| sandwich | Robust Covariance Matrix Estimators |
| sapa | Spectral Analysis for Physical Applications |
| sas7bdat | SAS Database Reader (experimental) |
| SAScii | Import ASCII files directly into R using only a SAS input script |
| SASmixed | Data sets from "SAS System for Mixed Models" |
| SASPECT | Significant AnalysiS of PEptide CounTs |
| SASxport | Read and Write SAS XPORT Files |
| satin | Functions for reading and displaying satellite data for
oceanographic applications with R |
| saves | Fast load variables |
| saws | Small-Sample Adjustments for Wald tests Using Sandwich
Estimators |
| sBF | Smooth Backfitting |
| sbgcop | Semiparametric Bayesian Gaussian copula estimation and
imputation |
| SBSA | Simplified Bayesian Sensitivity Analysis |
| sca | Simple Component Analysis |
| scagnostics | Compute scagnostics - scatterplot diagnostics |
| scaleboot | Approximately Unbiased P-values via Multiscale Bootstrap |
| scaleCoef | Scale regression coefficients |
| scales | Scale functions for graphics |
| scam | Shape constrained additive models |
| scape | Statistical Catch-at-Age Plotting Environment |
| scapeMCMC | MCMC Diagnostic Plots |
| scaRabee | Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models |
| scatterplot3d | 3D Scatter Plot |
| schoolmath | Functions and datasets for math used in school |
| schwartz97 | A package on the Schwartz two-factor commodity model |
| scio | Sparse Column-wise Inverse Operator |
| sciplot | Scientific Graphing Functions for Factorial Designs |
| SciViews | SciViews GUI API - Main package |
| SCMA | Single-Case Meta-Analysis |
| ScottKnott | The ScottKnott Clustering Algoritm |
| scout | Implements the Scout method for Covariance-Regularized
Regression |
| SCperf | Supply Chain Perform |
| scrapeR | Tools for Scraping Data from HTML and XML Documents |
| scrime | Analysis of High-Dimensional Categorical Data such as SNP Data |
| scriptests | Transcript-based unit tests that are easy to create and maintain |
| SCRT | Single-Case Randomization Tests |
| scuba | Scuba diving calculations and decompression models |
| sculpt3d | A simple toolbar GUI for brushing RGL plots |
| SCVA | Single-Case Visual Analysis |
| sda | Shrinkage Discriminant Analysis and CAT Score Variable Selection |
| SDaA | Sampling: Design and Analysis |
| sdcMicro | Statistical Disclosure Control methods for the generation of
public- and scientific-use files |
| sdcMicroGUI | Graphical user interface for package sdcMicro |
| sdcTable | Methods for SDC (statistical disclosure control) in tabular data |
| SDDA | Stepwise Diagonal Discriminant Analysis |
| sddpack | Semidiscrete Decomposition |
| sde | Simulation and Inference for Stochastic Differential Equations |
| sdef | Synthesizing List of Differentially Expressed Features |
| SDisc | Integrated methodology for the identification of homogeneous
subtypes in data |
| SDMTools | Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises |
| sdprisk | Measures of Risk for the Compound Poisson Risk Process with
Diffusion |
| sdtalt | Signal detection theory and alternatives |
| sdtoolkit | Scenario Discovery Tools to Support Robust Decision Making |
| seacarb | seawater carbonate chemistry with R |
| SearchTrees | Spatial Search Trees |
| seas | Seasonal analysis and graphics, especially for climatology |
| season | Seasonal analysis of health data |
| secr | Spatially explicit capture-recapture |
| SEER2R | reading and writing SEER*STAT data files |
| seewave | Time wave analysis and graphical representation |
| seg | A set of tools for residential segregation research |
| segmented | Segmented relationships in regression models with
breakpoints/changepoints estimation |
| SE.IGE | Standard errors of estimated genetic parametes |
| SEL | Semiparametric elicitation |
| selectiongain | Expected gain from multistages selection |
| selectMeta | Estimation of weight functions in meta analysis |
| SeleMix | Selective Editing via Mixture models |
| sem | Structural Equation Models |
| semdiag | Structural equation modeling diagnostics |
| semGOF | Goodness-of-fit indeces for structural equations models |
| SemiPar | Semiparametic Regression |
| SemiParBIVProbit | Semiparametric Bivariate Probit Modelling |
| SemiParSampleSel | Semiparametric Sample Selection Modelling with Continuous
Response |
| SEMModComp | Model Comparisons for SEM |
| semPLS | Structural Equation Modeling Using Partial Least Squares |
| semTools | Useful tools for structural equation modeling |
| sendmailR | send email using R |
| sendplot | Tool for sending interactive plots with tool-tip content |
| sensitivity | Sensitivity Analysis |
| sensitivityPStrat | Principal Stratification Sensitivity Analysis Functions |
| SensoMineR | Sensory data analysis with R |
| sensR | Thurstonian models for sensory discrimination |
| SenSrivastava | Datasets from Sen & Srivastava |
| sentiment | Tools for Sentiment Analysis |
| separationplot | Separation Plots |
| seqCBS | CN Profiling using Sequencing and CBS |
| seqinr | Biological Sequences Retrieval and Analysis |
| SeqKnn | Sequential KNN imputation method |
| seqmon | Sequential Monitoring of Clinical Trials |
| seqRFLP | Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences |
| seriation | Infrastructure for seriation |
| session | Functions for interacting with, saving and restoring R sessions |
| sessionTools | Tools for saving, restoring and teleporting R sessions |
| setRNG | Set (Normal) Random Number Generator and Seed |
| sets | Sets, Generalized Sets, Customizable Sets and Intervals |
| setwidth | Set the value of options("width") on terminal emulators |
| sfa | Stochastic Frontier Analysis |
| sfsmisc | Utilities from Seminar fuer Statistik ETH Zurich |
| sft | Functions for Systems Factorial Technology Analysis of Data |
| SGCS | Spatial Graph based Clustering Summaries for spatial point
patterns |
| sgeostat | An Object-oriented Framework for Geostatistical Modeling in S+ |
| SGL | Fit a GLM (or cox model) with a combination of lasso and group
lasso regularization |
| SGP | An R Package for the Calculation and Visualization of Student
Growth Percentiles & Percentile Growth Trajectories |
| SGPdata | Exemplar data sets for SGP analyses |
| shape | Functions for plotting graphical shapes, colors |
| shapefiles | Read and Write ESRI Shapefiles |
| shapes | Statistical shape analysis |
| sharx | Models and Data Sets for the Study of Species-Area Relationships |
| SHIP | SHrinkage covariance Incorporating Prior knowledge |
| shotGroups | Analyze shot group data |
| siar | Stable Isotope Analysis in R |
| sideChannelAttack | Side Channel Attack |
| sifds | Swedish inflation forecast data set |
| sigclust | Statistical Significance of Clustering |
| SightabilityModel | Wildlife Sightability Modeling |
| signal | Signal processing |
| signalextraction | Real-Time Signal Extraction (Direct Filter Approach) |
| SigWinR | SigWin-detector implementation in R |
| SII | Calculate ANSI S3.5-1997 Speech Intelligibility Index |
| simba | A Collection of functions for similarity analysis of vegetation
data |
| simboot | Simultaneous inference for diversity indices |
| simco | A package to import Structure files and deduce similarity
coefficients from them |
| SimComp | Simultaneous Comparisons for Multiple Endpoints |
| simctest | Safe implementation of Monte Carlo tests |
| Sim.DiffProc | Simulation of Diffusion Processes |
| Sim.DiffProcGUI | Graphical User Interface for Simulation of Diffusion Processes |
| simecol | Simulation of ecological (and other) dynamic systems |
| simex | SIMEX- and MCSIMEX-Algorithm for measurement error models |
| simexaft | simexaft |
| simFrame | Simulation framework |
| similarityRichards | Similarity of Richards curves |
| Simile | Interact with Simile models |
| simone | Statistical Inference for MOdular NEtworks (SIMoNe) |
| simpleboot | Simple Bootstrap Routines |
| SimpleTable | Bayesian Inference and Sensitivity Analysis for Causal Effects
from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured
Confounding |
| simPopulation | Simulation of synthetic populations for surveys based on sample
data |
| simsem | SIMulated Structural Equation Modeling |
| simSummary | Simulation summary |
| SimultAnR | Correspondence and Simultaneous Analysis |
| SIN | A SINful Approach to Selection of Gaussian Graphical Markov
Models |
| sinartra | A simple web app framework for R, based on sinatra |
| SIS | Sure Independence Screening |
| sisus | SISUS: Stable Isotope Sourcing using Sampling |
| sitools | Format a number to a string with SI prefix |
| SixSigma | Six Sigma Tools for Quality and Process Improvement |
| SiZer | SiZer: Significant Zero Crossings |
| SKAT | SNP-set (Sequence) Kernel Association Test |
| skellam | Skellam distribution |
| SkewHyperbolic | The Skew Hyperbolic Student t-Distribution |
| skewt | The Skewed Student-t Distribution |
| skewtools | Tools for analyze Skew-Elliptical distributions and related
models |
| skills | Skills in Knowledge Space Theory |
| skmeans | Spherical k-Means Clustering |
| slam | Sparse Lightweight Arrays and Matrices |
| SLC | Slope and level change |
| Sleuth2 | Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd
ed)" |
| SlimPLS | SlimPLS multivariate feature selection |
| sm | Smoothing methods for nonparametric regression and density
estimation |
| smacof | SMACOF for Multidimensional Scaling |
| smatr | (Standardised) Major Axis Estimation and Testing Routines |
| SMC | Sequential Monte Carlo (SMC) Algorithm |
| smco | A simple Monte Carlo optimizer using adaptive coordinate
sampling |
| SMCP | Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies |
| smcure | Fit Semiparametric Mixture Cure Models |
| smcUtils | Utility functions for sequential Monte Carlo |
| smfsb | SMfSB 2e: Stochastic Modelling for Systems Biology, second
edition |
| SMIR | Companion to Statistical Modelling in R |
| smirnov | Provides two taxonomic coefficients from E. S. Smirnov
"Taxonomic analysis" (1969) book |
| smoothmest | Smoothed M-estimators for 1-dimensional location |
| smoothSurv | Survival Regression with Smoothed Error Distribution |
| smoothtail | Smooth Estimation of GPD Shape Parameter |
| SMPracticals | Practicals for use with Davison (2003) Statistical Models |
| SMVar | Structural Model for variances |
| sn | The skew-normal and skew-t distributions |
| sna | Tools for Social Network Analysis |
| snort | Social Network-Analysis On Relational Tables |
| snow | Simple Network of Workstations |
| Snowball | Snowball Stemmers |
| snowfall | Easier cluster computing (based on snow) |
| snowFT | Fault Tolerant Simple Network of Workstations |
| SNPassoc | SNPs-based whole genome association studies |
| SNPMaP | SNP Microarrays and Pooling in R |
| SNPMaP.cdm | Annotation for SNP Microarrays and Pooling in R |
| SNPmaxsel | Maximally selected statistics for SNP data |
| snp.plotter | snp.plotter |
| SNPRelate | Parallel Computing Toolset for Genome-Wide Association Studies
(GWAS) |
| snpXpert | Tools to analysis SNP data |
| SOAR | Memory management in R by delayed assignments |
| SoDA | Functions and Exampels for "Software for Data Analysis" |
| softclassval | Soft classification performance measures |
| soilDB | Soil Database Interface |
| SoilR | Models of Soil Organic Matter Decomposition |
| soil.spec | Soil spectral data exploration and regression functions |
| soiltexture | Functions for soil texture plot, classification and
transformation |
| solaR | Solar Photovoltaic Systems |
| som | Self-Organizing Map |
| soma | General-purpose optimisation with the Self-Organising Migrating
Algorithm |
| someKfwer | Controlling the Generalized Familywise Error Rate |
| someMTP | Some Multiple Testing Procedures |
| somplot | Visualisation of hexagonal Kohonen maps |
| soobench | Single Objective Optimization Benchmark Functions |
| SortableHTMLTables | Turns a data frame into an HTML file containing a sortable
table |
| sos | sos |
| sos4R | An R client for the OGC Sensor Observation Service |
| sound | A Sound Interface for R |
| sp | classes and methods for spatial data |
| spa | Implements The Sequential Predictions Algorithm |
| SPA3G | SPA3G: R package for the method of Li and Cui (2012) |
| spaa | SPecies Association Analysis |
| space | Sparse PArtial Correlation Estimation |
| SPACECAP | A Program to Estimate Animal Abundance and Density using
Bayesian Spatially-Explicit Capture-Recapture Models |
| spaceExt | Extension of SPACE |
| spacetime | classes and methods for spatio-temporal data |
| spacodiR | Spatial and Phylogenetic Analysis of Community Diversity |
| spam | SPArse Matrix |
| sparcl | Perform sparse hierarchical clustering and sparse k-means
clustering |
| sparkTable | Sparklines and graphical tables for tex and html |
| SPARQL | SPARQL client |
| sparr | The sparr package: SPAtial Relative Risk |
| SparseGrid | Sparse grid integration in R |
| sparseLDA | Sparse Discriminant Analysis |
| sparseLTSEigen | RcppEigen back end for sparse least trimmed squares regression |
| SparseM | Sparse Linear Algebra |
| sparsenet | Fit sparse linear regression models via nonconvex optimization |
| spartan | Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN) |
| spatcounts | Spatial count regression |
| spatgraphs | Graphs for spatial point patterns |
| spatial | Functions for Kriging and Point Pattern Analysis |
| spatialCovariance | Computation of spatial covariance matrices for data on
rectangles |
| SpatialEpi | Performs various spatial epidemiological analyses |
| SpatialExtremes | Modelling Spatial Extremes |
| spatialkernel | Nonparameteric estimation of spatial segregation in a
multivariate point process |
| SpatialNP | Multivariate nonparametric methods based on spatial signs and
ranks |
| spatialprobit | Spatial Probit Models |
| spatialsegregation | Segregation measures for multitype spatial point patterns |
| SpatialTools | SpatialTools |
| SpatialVx | Spatial Forecast Verification |
| SpatioTemporal | Spatio-Temporal Model Estimation |
| spatstat | Spatial Point Pattern analysis, model-fitting, simulation, tests |
| spBayes | Univariate and Multivariate Spatial Modeling |
| spc | Statistical Process Control |
| spcadjust | Functions for calibrating control charts |
| spcosa | Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata |
| spcov | Sparse Estimation of a Covariance Matrix |
| spd | Semi Parametric Distribution |
| spdep | Spatial dependence: weighting schemes, statistics and models |
| spe | Stochastic Proximity Embedding |
| SPECIES | Statistical package for species richness estimation |
| SpeciesMix | Fit Mixtures of Archetype species |
| SpectralGEM | Discovering Genetic Ancestry Using Spectral Graph Theory |
| spectralGP | Approximate Gaussian processes using the Fourier basis |
| speedglm | Fitting Linear and Generalized Linear Models to large data sets |
| speedR | A GUI based importing and filtering tool |
| speedRlibs | Package containing the required libraries (jars) for speedR |
| speedRlibTF | speedR's table filter library |
| speff2trial | Semiparametric efficient estimation for a two-sample treatment
effect |
| SPEI | Calculation of the Standardised Precipitation-Evapotranspiration
Index |
| sperich | Auxiliary functions to estimate centers of biodiversity |
| spgrass6 | Interface between GRASS 6+ geographical information system and R |
| spgwr | Geographically weighted regression |
| SpherWave | Spherical Wavelets and SW-based Spatially Adaptive Methods |
| sphet | Spatial Models with heteroskedastic innovations |
| spi | Compute SPI index |
| SPIAssay | A genetic-based assay for the identification of cell lines |
| spider | Species Identity and Evolution in R |
| spikeslab | Prediction and variable selection using spike and slab
regression |
| spikeSlabGAM | Bayesian variable selection and model choice for generalized
additive mixed models |
| SPIn | Optimal Shortest Probability Intervals |
| splancs | Spatial and Space-Time Point Pattern Analysis |
| splinesurv | Nonparametric bayesian survival analysis |
| splm | Econometric Models for Spatial Panel Data |
| spls | Sparse Partial Least Squares (SPLS) Regression and
Classification |
| splus2R | Supplemental S-PLUS functionality in R |
| spMC | Continuous Lag Spatial Markov Chains |
| sporm | Semiparametric proportional odds rate model |
| SportsAnalytics | Infrastructure for Sports Analytics |
| SPOT | Sequential Parameter Optimization |
| sprint | Simple Parallel R INTerface |
| SPSL | Site Percolation on Square Lattice (SPSL) |
| spssDDI | Read SPSS System files and produce valid DDI Version 3.0
documents |
| spsurvey | Spatial Survey Design and Analysis |
| spt | Sierpinski Pedal Triangle |
| spuRs | Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R" |
| sqldf | Perform SQL Selects on R Data Frames |
| SQLiteMap | Wrapper to spatialite functions |
| SQN | subset quantile normalization |
| SQUAREM | Squared extrapolation methods for accelerating fixed-point
iterations |
| squash | Color-based plots for multivariate visualization |
| sra | Selection Response Analysis |
| SRMA | SRMA Analysis of Array-based Sequencing Data |
| sROC | Nonparametric Smooth ROC Curves for Continuous Data |
| SRPM | Shared Reproducibility Package Management |
| ssanv | Sample Size Adjusted for Nonadherence or Variability of input
parameters |
| ssize.fdr | Sample Size Calculations for Microarray Experiments |
| sspir | State Space Models in R |
| sspline | Smoothing Splines on the Sphere |
| sss | Tools for importing files in the triple-s .(Standard Survey
Structure) format |
| SSsimple | State space models |
| SSSR | Server Side Scripting with R |
| st | Shrinkage t Statistic and CAT Score |
| stab | data analysis of drug stability for shelf life estimation |
| stabledist | Stable Distribution Functions |
| stam | Spatio-Temporal Analysis and Modelling |
| standGL | Standardized Group Lasso |
| STAR | Spike Train Analysis with R |
| startupmsg | Utilities for start-up messages |
| stashR | A Set of Tools for Administering SHared Repositories |
| StatDA | Statistical Analysis for Environmental Data |
| StatDataML | implementation of the StatDataML proposal |
| StateTrace | Bayesian Ordinal Analysis for State Trace Designs |
| StatFingerprints | StatFingerprints |
| StatMatch | Statistical Matching |
| statmod | Statistical Modeling |
| steepness | Testing Steepness of Dominance Hierarchies |
| stellaR | stellar evolution tracks and isochrones |
| Stem | Spatio-temporal models in R |
| stepp | Subpopulation Treatment Effect Pattern Plot (STEPP) |
| stepPlr | L2 penalized logistic regression with a stepwise variable
selection |
| stepwise | Stepwise detection of recombination breakpoints |
| stinepack | Stineman, a consistently well behaved method of interpolation |
| StMoSim | Simulate QQ-Norm-Plot |
| StochaTR | Solving stochastic linear programs with a single risk constraint |
| stochmod | Stochastic Modeling |
| stockPortfolio | Build stock models and analyze stock portfolios |
| stoichcalc | R Functions for Solving Stoichiometric Equations |
| stpp | Space-Time Point Pattern simulation, visualisation and analysis |
| stratasphere | Stratified Spherical Approximate Conditional Modeling |
| stratification | Univariate Stratification of Survey Populations |
| stratigraph | Toolkit for the plotting and analysis of stratigraphic and
palaeontological data |
| StreamingLm | What the package does (short line) |
| StreamMetabolism | Stream Metabolism-A package for calculating single station
metabolism from diurnal Oxygen curves |
| stream.net | Building and analyzing binary stream networks |
| stremo | Functions to help the process of learning structural equation
modelling |
| StressStrength | Computation and estimation of reliability of stress-strength
models |
| stringr | Make it easier to work with strings |
| strucchange | Testing, Monitoring, and Dating Structural Changes |
| StructR | Structural geology tools |
| subplex | Subplex optimization algorithm |
| subselect | Selecting variable subsets |
| sudoku | Sudoku Puzzle Generator and Solver |
| sugaR | Plots to help optimising diabetes therapy |
| SunterSampling | Sunter's sampling design |
| supclust | Supervised Clustering of Predictor Variables such as Genes |
| superdiag | R Code for Testing Markov Chain Nonconvergence |
| SuperLearner | Super Learner Prediction |
| superMDS | Implements the supervised multidimensional scaling (superMDS)
proposal of Witten and Tibshirani (2011) |
| superpc | Supervised principal components |
| SuppDists | Supplementary distributions |
| support.CEs | Basic functions for supporting an implementation of choice
experiments |
| surv2sample | Two-Sample Tests for Survival Analysis |
| survAUC | Estimators of prediction accuracy for time-to-event data |
| survBayes | Fits a proportional hazards model to time to event data by a
Bayesian approach |
| survC1 | C-statistics for risk prediction models with censored survival
data |
| surveillance | Modeling and monitoring discrete response time series |
| survey | analysis of complex survey samples |
| Survgini | The Gini concentration test for survival data |
| survival | Survival analysis, including penalised likelihood |
| survivalBIV | Estimation of the bivariate distribution function |
| survivalROC | Time-dependent ROC curve estimation from censored survival data |
| survJamda | Survival prediction by joint analysis of microarray gene
expression data |
| survJamda.data | survJamda.data |
| survPresmooth | Presmoothed Estimation in Survival Analysis |
| survrec | Survival analysis for recurrent event data |
| survSNP | Power and Sample Size Calculations for SNP Association Studies
with Censored Time to Event Outcomes |
| SV | Quasi-likelihood and indirect inference in non-Gaussian
stochastic volatility models |
| svcm | 2d and 3d Space-Varying Coefficient Models |
| svd | Interfaces to various state-of-art SVD and eigensolvers |
| svDialogs | SciViews GUI API - Dialog boxes |
| SVGMapping | Map experimental data on custom-made SVG file |
| svGUI | SciViews GUI API - Functions to manage GUIs |
| svHttp | SciViews GUI API - R HTTP server |
| svIDE | SciViews GUI API - IDE and code editor functions |
| svKomodo | SciViews GUI API - Functions to interface with Komodo Edit/IDE |
| svMisc | SciViews GUI API - Miscellaneous functions |
| SVMMaj | SVMMaj algorithm |
| svmpath | svmpath: the SVM Path algorithm |
| svSocket | SciViews GUI API - R Socket Server |
| svSweave | SciViews GUI API - Sweave functions |
| svTools | SciViews GUI API - Tools (wrapper for packages tools and
codetools) |
| svUnit | SciViews GUI API - Unit testing |
| svWidgets | SciViews GUI API - Widgets & Windows |
| swamp | Analysis and visualization of high-dimensional data in respect
to sample annotations |
| SweaveListingUtils | Utilities for Sweave together with TeX listings package |
| SwissAir | Air Quality Data of Switzerland for one year in 30 min
Resolution |
| SWordInstaller | SWord: Use R in Microsoft Word (Installer) |
| swst | Print statistical results in Sweave |
| sybil | SyBiL - Efficient constrained based modelling in R |
| sybilDynFBA | Dynamic FBA : dynamic flux balance analysis |
| symbols | Symbol plots |
| symmoments | Symbolic Central Moments of the Multivariate Normal Distribution |
| synbreed | Framework for the analysis of genomic prediction data using R |
| synbreedData | Data for the synbreed package |
| synchronicity | Boost mutex functionality for R |
| SYNCSA | SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities |
| SynergizeR | Interface to The Synergizer service for translating between sets
of biological identifiers |
| SyNet | Inference and Analysis of Sympatry Networks |
| Synth | Synthetic Control Group Method for Comparative Case Studies |
| systemfit | Estimating Systems of Simultaneous Equations |
|
| tableplot | Represents tables as semi-graphic displays |
| tables | Formula-driven table generation |
| tabplot | Tableplot, a visualization of large datasets |
| tabplotGTK | A graphical user interface for the tabplot package |
| tabuSearch | R based tabu search algorithm |
| TAHMMAnnot | Mixture model approach to compare two samples of Tiling Array
data |
| TANOVA | Time Course Analysis of Variance for Microarray |
| taRifx | Collection of utility and convenience functions, and some
interesting spatial functions |
| taskPR | Task-Parallel R Package |
| tau | Text Analysis Utilities |
| TauP.R | Earthquake Traveltime Calculations for 1-D Earth Models |
| tawny | Provides various portfolio optimization strategies including
random matrix theory and shrinkage estimators |
| tawny.types | Common types for tawny |
| Taxonstand | Taxonomic standardization of plant species names |
| TCC | TCC: tag count comparison package |
| tcltk2 | Tcl/Tk Additions |
| tclust | Robust Trimmed Clustering |
| tdm | A Tool for Therapeutic Drug Monitoring (TDM) |
| TDMR | Tuned Data Mining in R |
| tdthap | TDT tests for extended haplotypes |
| TeachingDemos | Demonstrations for teaching and learning |
| TeachingSampling | Sampling designs and parameter estimation in finite population |
| tempdisagg | Methods for Temporal Disaggregation and Interpolation of Time
Series |
| tensor | Tensor product of arrays |
| tensorA | Advanced tensors arithmetic with named indices |
| TEQR | Target Equavelence Range Design |
| TERAplusB | Test for A+B Traditional Escalation Rule |
| termstrc | Zero-coupon Yield Curve Estimation |
| ternvis | Visualisation, verification and calibration of ternary
probabilistic forecasts |
| TestSurvRec | Statistical tests to compare two survival curves with recurrent
events |
| testthat | Testthat code. Tools to make testing fun :) |
| texmex | Threshold exceedences and multivariate extremes |
| textcat | N-Gram Based Text Categorization |
| textir | Inverse Regression for Text Analysis |
| TextRegression | Predict continuous valued outputs associated with text
documents |
| tfer | Forensic Glass Transfer Probabilities |
| tfplot | Time Frame User Utilities |
| tframe | Time Frame coding kernel |
| tframePlus | Time Frame coding kernel extensions |
| tgp | Bayesian treed Gaussian process models |
| tgram | Functions to compute and plot tracheidograms |
| TGUICore | Teaching GUI - Core functionality |
| TGUITeaching | Teaching GUI - prototype |
| thgenetics | Genetic Rare Variants Tests |
| ThreeGroups | ML Estimator for Baseline-Placebo-Treatment (Three-group)
designs |
| ThreeWay | Three-way component analysis |
| ThresholdROC | Optimum threshold estimation based on cost function in a two and
three state setting |
| tiger | TIme series of Grouped ERrors |
| tikzDevice | A Device for R Graphics Output in PGF/TikZ Format |
| tileHMM | Hidden Markov Models for ChIP-on-Chip Analysis |
| TilePlot | Characterization of functional genes in complex microbial
communities using tiling DNA microarrays |
| tilting | Variable selection via Tilted Correlation Screening algorithm |
| timeDate | Rmetrics - Chronological and Calendarical Objects |
| timeordered | Time-ordered and time-aggregated network analyses |
| timereg | timereg package for Flexible regression models for survival
data |
| timeSeries | Rmetrics - Financial Time Series Objects |
| timetools | provides objects and tools to manipulate irregular unhomogeneous
time data and subtime data |
| TimeWarp | Date calculations and manipulation |
| TIMP | a problem solving environment for fitting separable nonlinear
models in physics and chemistry applications |
| timsac | TIMe Series Analysis and Control package |
| Tinflex | Tinflex - Universal non-uniform random number generator |
| TinnR | Resources of Tinn-R GUI/Editor for R Environment |
| tis | Time Indexes and Time Indexed Series |
| titan | Titration analysis for mass spectrometry data |
| tkrgl | TK widget tools for rgl package |
| tkrplot | TK Rplot |
| tlemix | Trimmed Maximum Likelihood Estimation |
| tlmec | Linear Student-t Mixed-Effects Models with Censored Data |
| tlnise | Two-level normal independent sampling estimation |
| tm | Text Mining Package |
| tmle | Targeted Maximum Likelihood Estimation |
| tm.plugin.dc | Text Mining Distributed Corpus Plug-In |
| tm.plugin.factiva | A plug-in for the tm text mining framework to import articles
from Factiva |
| tm.plugin.mail | Text Mining E-Mail Plug-In |
| tmvtnorm | Truncated Multivariate Normal and Student t Distribution |
| tnet | tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks |
| tolerance | Functions for calculating tolerance intervals |
| tonymisc | Functions for Econometrics Output |
| topicmodels | Topic models |
| topmodel | Implementation of the hydrological model TOPMODEL in R |
| topologyGSA | topologyGSA |
| tourr | Implement tour methods in pure R code |
| tourrGui | A Tour GUI using gWidgets |
| ToxLim | Incorporating Ecological Data and Associated Uncertainty in
Bioaccumulation Modeling |
| TPAM | TPAM |
| tpe | Tree preserving embedding |
| tpr | Temporal Process Regression |
| track | Track Objects |
| trackObjs | Track Objects |
| tractor.base | A package for reading, manipulating and visualising magnetic
resonance images |
| traitr | An interface for creating GUIs modeled in part after traits UI
module for python |
| TraMineR | Sequences and trajectories mining for social scientists |
| TRAMPR | TRFLP Analysis and Matching Package for R |
| translate | Bindings for the Google Translate API v2 |
| trapezoid | The Trapezoidal Distribution |
| tree | Classification and regression trees |
| treebase | R interface to TreeBASE |
| treecm | Estimating and plotting the centre of mass of a tree |
| treemap | Treemap visualization |
| TreePar | Estimating speciation and extinction rates based on phylogenies |
| TreeSim | Simulating trees under the birth-death model |
| treethresh | Methods for Tree-based Local Adaptive Thresholding |
| trex | Truncated exact test for two-stage case-control design for
studying rare genetic variants |
| triads | Triad census for networks |
| TRIANG | Symmetric discrete triangular distributions |
| TRIANGG | General discrete triangular distribution |
| triangle | Provides the standard distribution functions for the triangle
distribution |
| trifield | Some basic facilities for ternary fields and plots |
| trimcluster | Cluster analysis with trimming |
| trio | Detection of disease-associated SNP interactions in case-parent
trio data |
| trip | Spatial analysis of animal track data |
| tripack | Triangulation of irregularly spaced data |
| tripEstimation | Metropolis sampler and supporting functions for estimating
animal movement from archival tags and satellite fixes |
| TripleR | Social Relation Model (SRM) analyses for single or multiple
round-robin groups |
| truncdist | Truncated Random Variables |
| truncgof | GoF tests allowing for left truncated data |
| truncnorm | Truncated normal distribution |
| truncreg | Truncated Regression Models |
| truncSP | Semi-parametric estimators of truncated regression models |
| trust | Trust Region Optimization |
| TSA | Time Series Analysis |
| TSAgg | Time series Aggregation |
| TSdbi | Time Series Database Interface |
| tsDyn | Nonlinear time series models with regime switching |
| tseries | Time series analysis and computational finance |
| tseriesChaos | Analysis of nonlinear time series |
| tsfa | Time Series Factor Analysis |
| TSfame | Time Series Database Interface extensions for fame |
| TSgetSymbol | Time Series Database Interface extension to connect with
getSymbols |
| TShistQuote | Time Series Database Interface extensions for get.hist.quote |
| TSHRC | Two Stage Hazard Rate Comparison |
| tslars | Least angle regression for time series analysis |
| tsModel | Time Series Modeling for Air Pollution and Health |
| TSMySQL | Time Series Database Interface extensions for MySQL |
| tsne | T-distributed Stochastic Neighbor Embedding for R (t-SNE) |
| TSodbc | Time Series Database Interface extensions for ODBC |
| TSP | Traveling Salesperson Problem (TSP) |
| TSpadi | Time Series Database Interface extensions for PADI Time Series
Server |
| TSPC | Prediction using time-course gene expression |
| Tsphere | Transposable Sphering for Large-Scale Inference with Correlated
Data |
| TSPostgreSQL | Time Series Database Interface extensions for PostgreSQL |
| TSSQLite | Time Series Database Interface extentions for SQLite |
| TSxls | Time Series Database Interface extension to connect to
spreadsheets |
| TSzip | Time Series Database Interface extension to connect to zip files |
| TTAinterfaceTrendAnalysis | Temporal Trend Analysis Graphical Interface |
| TTR | Technical Trading Rules |
| ttrTests | Standard Backtests for Technical Trading Rules in Financial Data |
| ttutils | Utility functions |
| TunePareto | Multi-objective parameter tuning for classifiers |
| tuneR | Analysis of music and speech |
| turboEM | A Suite of Convergence Acceleration Schemes for EM and MM
algorithms |
| TUWmodel | Lumped hydrological model developed at the Vienna University of
Technology for education purposes |
| twang | Toolkit for Weighting and Analysis of Nonequivalent Groups |
| tweedie | Tweedie exponential family models |
| twiddler | Interactive manipulation of R expressions |
| twitteR | R based Twitter client |
| TWIX | Trees WIth eXtra splits |
| TwoPhaseInd | Two-Phase Independence |
| two.stage.boot | Two-stage cluster sample bootstrap algorithm |
| TwoStepCLogit | Conditional logistic regression: A two-step estimation method |
| TwoWaySurvival | Additiv Two-Way Hazards Modelling of Right Censored Survival
Data |
| twslm | A two-way semilinear model for normalization and analysis of
cDNA microarray data |
| txtplot | Text based plots |
|
| ucminf | General-purpose unconstrained non-linear optimization |
| udunits2 | udunits-2 bindings for R |
| ump | Uniformly Most Powerful Tests |
| unbalhaar | Function estimation via Unbalanced Haar wavelets |
| uncompress | Uncompress |
| Unicode | Unicode data and utilities |
| uniCox | Univarate shrinkage prediction in the Cox model |
| unknownR | You didn't know you didn't know? |
| unmarked | Models for Data from Unmarked Animals |
| untb | ecological drift under the UNTB |
| urca | Unit root and cointegration tests for time series data |
| UScensus2000 | US Census 2000 Suite of R Packages |
| UScensus2000add | US Census 2000 Suite of R Packages: Demographic Add |
| UScensus2000blkgrp | US Census 2000 Block Group Shapefiles and Additional Demographic
Data |
| UScensus2000cdp | US Census 2000 Designated Places Shapefiles and Additional
Demographic Data |
| UScensus2000tract | US Census 2000 Tract Level Shapefiles and Additional Demographic
Data |
| UScensus2010 | US Census 2010 Suite of R Packages: Installers and
helperfunctions for UScensus2010blk, UScensus2010blkgrp,
UScensus2010tract, UScensus2010county, UScensus2010cdp
packages |
| useful | A collection of handy, useful functions |
| UsingR | Data sets for the text "Using R for Introductory Statistics" |
| USPS | Unsupervised and Supervised methods of Propensity Score
Adjustment for Bias |
|
| vacem | Vaccination Activities Coverage Estimation Model |
| validator | External and Internal Validation Indices |
| varbvs | Variational inference for Bayesian variable selection |
| varcompci | VARCOMPCI: A Package for Computation of Confidence Intervals for
Variance Components of Mixed Models in R |
| vardiag | A package for variogram diagnostics |
| VarEff | Variation of effective population size |
| VariABEL | Testing of genotypic variance heterogeneity to detect
potentially interacting SNP |
| VarianceGamma | The Variance Gamma Distribution |
| vars | VAR Modelling |
| varSelectIP | Objective Bayes Model Selection |
| varSelRF | Variable selection using random forests |
| VarSwapPrice | Pricing a variance swap on an equity index |
| VBLPCM | Variational Bayes Latent Position Cluster Model for networks |
| VBMA4hmm | The VBMA4hmm (Variational Bayesian Markov Model for hidden
markov model) package |
| VBmix | Variational Bayesian mixture models |
| vcd | Visualizing Categorical Data |
| vcdExtra | vcd additions |
| Vdgraph | This package creates variance dispersion graphs for response
surface designs |
| vec2dtransf | 2D Cartesian Coordinate Transformation |
| VecStatGraphs2D | Vector analysis using graphical and analytical methods in 2D |
| VecStatGraphs3D | Vector analysis using graphical and analytical methods in 3D |
| vegan | Community Ecology Package |
| vegclust | Fuzzy clustering of vegetation data |
| vegdata | Functions to access vegetation databases (Turboveg) and prepare
vegetation data for analysis |
| vegetarian | Jost Diversity Measures for Community Data |
| VennDiagram | Generate high-resolution Venn and Euler plots |
| venneuler | Venn and Euler Diagrams |
| verification | Forecast verification utilities |
| VGAM | Vector Generalized Linear and Additive Models |
| VhayuR | Vhayu R Interface |
| VHDClassification | Discrimination/Classification in very high dimension with linear
and quadratic rules |
| VIF | VIF Regression: A Fast Regression Algorithm For Large Data |
| VIM | Visualization and Imputation of Missing Values |
| vimcom | Intermediate the communication between Vim and R |
| vines | Multivariate Dependence Modeling with Vines |
| violinmplot | Combination of violin plot with mean and standard deviation |
| vioplot | Violin plot |
| viopoints | 1-D Scatter Plots with Jitter Using Kernel Density Estimates |
| VisCov | Visualizing of distributions of covariance matrices |
| visualFields | Statistical methods for visual fields |
| visualizationTools | Package contains a few functions to visualize statistical
circumstances |
| VizCompX | Visualisation of Computer Models |
| VLMC | VLMC – Variable Length Markov Chains |
| vmv | Visualization of Missing Values |
| voronoi | Methods and applications related to Voronoi tessellations |
| vowels | Vowel Manipulation, Normalization, and Plotting |
| VPdtw | Variable Penalty Dynamic Time Warping |
| vrmlgen | Generate 3D visualizations for data exploration on the web |
| vrtest | Variance Ratio tests and other tests for Martigale Difference
Hypothesis |
| vwr | Useful functions for visual word recognition research |
|
| waffect | A package to simulate constrained phenotypes under a disease
model H1 |
| walkscoreAPI | Walk Score and Transit Score API |
| wasim | Visualisation and analysis of output files of the hydrological
model WASIM |
| waterfall | Waterfall Charts in R |
| waveband | Computes credible intervals for Bayesian wavelet shrinkage |
| WaveCD | Wavelet change point detection for array CGH data |
| waveclock | Time-frequency analysis of cycling cell luminescence data |
| waved | Wavelet Deconvolution |
| WaveletCo | Wavelet Coherence Analysis |
| wavelets | A package of funtions for computing wavelet filters, wavelet
transforms and multiresolution analyses |
| wavemulcor | Wavelet routine for multiple correlation |
| waveslim | Basic wavelet routines for one-, two- and three-dimensional
signal processing |
| wavethresh | Wavelets statistics and transforms |
| wccsom | SOM networks for comparing patterns with peak shifts |
| WDI | World Development Indicators (World Bank) |
| websockets | HTML 5 Websocket Interface for R |
| webvis | Create graphics for the web from R |
| weightedKmeans | Weighted KMeans Clustering |
| weightedScores | Weighted scores method for regression with dependent data |
| weights | Weighting and Weighted Statistics |
| weirs | A Hydraulics Package to Compute Open-Channel Flow over Weirs |
| wfe | Weighted Linear Fixed Effects Estimators for Causal Inference |
| wgaim | Whole Genome Average Interval Mapping for QTL detection using
mixed models |
| WGCNA | Weighted Correlation Network Analysis |
| WhatIf | WhatIf: Software for Evaluating Counterfactuals |
| whisker | {{mustache}} for R, logicless templating |
| WideLM | Fitting many skinny linear models to a single data set |
| wikibooks | Functions and datasets of the german WikiBook "GNU R" |
| WilcoxCV | Wilcoxon-based variable selection in cross-validation |
| wild1 | R Tools for Wildlife Research and Management |
| wle | Weighted Likelihood Estimation |
| WMBrukerParser | William and Mary Parser For Bruker-Ultraflex Mass Spec Data |
| WMCapacity | GUI implementing Bayesian working memory models |
| WMTregions | Exact Calculation of WMTR |
| wmtsa | Wavelet Methods for Time Series Analysis |
| wnominate | WNOMINATE Roll Call Analysis Software |
| wombsoft | Wombling Computation |
| wordcloud | Word Clouds |
| wordnet | WordNet Interface |
| wq | Exploring water quality monitoring data |
| write.snns | Function for exporting data to SNNS pattern files |
| WriteXLS | Cross-platform Perl based R function to create Excel 2003 (XLS)
files |
| wSVM | Weighted SVM with boosting algorithm for improving accuracy |
| wvioplot | Weighted violin plot |
| WWGbook | Functions and datasets for WWGbook |
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| x12 | X12 - wrapper function and structure for batch processing |
| xgobi | Interface to the XGobi and XGvis programs for graphical data
analysis |
| xgrid | Access Apple Xgrid using R |
| XLConnect | Excel Connector for R |
| XLConnectJars | JAR dependencies for the XLConnect package |
| xlsReadWrite | Read and write Excel files (.xls) |
| xlsx | Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files |
| xlsxjars | Package required jars for the xlsx package |
| XML | Tools for parsing and generating XML within R and S-Plus |
| xpose4 | Xpose 4 |
| xpose4classic | Xpose 4 Classic Menu System |
| xpose4data | Xpose 4 Data Functions Package |
| xpose4generic | Xpose 4 Generic Functions Package |
| xpose4specific | Xpose 4 Specific Functions Package |
| xtable | Export tables to LaTeX or HTML |
| xterm256 | Support for xterm256 escape sequences |
| xtermStyle | Basic text formatting using xterm escape sequences |
| xts | eXtensible Time Series |
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| yacca | Yet Another Canonical Correlation Analysis Package |
| yaImpute | yaImpute: An R Package for k-NN Imputation |
| YaleToolkit | Data exploration tools from Yale University |
| yaml | Methods to convert R data to YAML and back |
| yhat | Interpreting Regression Effects |
| YieldCurve | Modelling and estimation of the yield curve |
| YjdnJlp | Text Analysis by Yahoo! Japan Develper Network |
| YourCast | Forecasting age-sex-country-cause mortality rates |
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| Zelig | Everyone's Statistical Software |
| zic | Bayesian Inference for Zero-Inflated Count Models |
| zipcode | U.S. ZIP Code database for geocoding |
| zipfR | Statistical models for word frequency distributions |
| zoeppritz | Zoeppritz Equations |
| zoo | S3 Infrastructure for Regular and Irregular Time Series (Z's
ordered observations) |
| zyp | Zhang + Yue-Pilon trends package |