synbreed: Framework for the analysis of genomic prediction data using R

The package was developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). It contains a collection of functions required for genomic prediction in both plant and animal breeding. This covers data processing, data visualization and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).

Version: 0.9-7
Depends: R (≥ 2.14), doBy, BLR, regress (≥ 1.3-8), abind
Imports: lattice, igraph, MASS, LDheatmap, qtl, synbreedData (≥ 1.3)
Published: 2013-08-27
Author: Valentin Wimmer, Theresa Albrecht, Hans-Juergen Auinger, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer <Valentin.Wimmer at tum.de>
License: GPL-2
URL: http://synbreed.r-forge.r-project.org/
NeedsCompilation: no
Citation: synbreed citation info
Materials: NEWS
CRAN checks: synbreed results

Downloads:

Reference manual: synbreed.pdf
Vignettes: Introduction to the synbreed package
Package source: synbreed_0.9-7.tar.gz
MacOS X binary: synbreed_0.9-7.tgz
Windows binary: synbreed_0.9-7.zip
Old sources: synbreed archive